Evidence map›Paper›PMID 11565750›Full record

ArticleRNA (New York, N.Y.)2001

Evidence for a role of Sky1p-mediated phosphorylation in 3' splice site recognition involving both Prp8 and Prp17/Slu4.

S F Dagher, X D Fu

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Diverse regulation of 3' splice site usage.Cellular and molecular life sciences : CMLS · 2015
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Splice-site pairing is an intrinsically high fidelity process.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  13. Exon ligation is proofread by the DExD/H-box ATPase Prp22p.Nature structural & molecular biology · 2006
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

S F DagherDepartment of Cellular and Molecular Medicine, School of Medicine, University of California, San Diego, La Jolla 92093-0651, USA.
X D Fu
University of California, San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SRPK family of kinases is specific for RS domain-containing splicing factors and known to play a critical role in protein-protein interaction and intracellular distribution of their substrates in both yeast and mammalian cells. However, the function of these kinases in pre-mRNA splicing remains unclear. Here we report that SKY1, a SRPK family member in Saccharomyces cerevisiae, genetically interacts with PRP8 and PRP17/SLU4, both of which are involved in splice site selection during pre-mRNA splicing. Prp8 is essential for splicing and is known to interact with both 5' and 3' splice sites in the spliceosomal catalytic center, whereas Prp17/Slu4 is nonessential and is required only for efficient recognition of the 3' splice site. Interestingly, deletion of SKY1 was synthetically lethal with all prp17 mutants tested, but only with specific prp8 alleles in a domain implicated in governing fidelity of 3'AG recognition. Indeed, deletion of SKY1 specifically suppressed 3'AG mutations in ACT1-CUP1 splicing reporters. These results suggest for the first time that 3' AG recognition may be subject to phosphorylation regulation by Sky1p during pre-mRNA splicing.

Indexed as

3' Untranslated RegionsCell Cycle ProteinsDNA-Binding ProteinsRNA-Binding ProteinsRNA PrecursorsSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsAllelesFungal ProteinsGenes, FungalPhosphorylationProtein Serine-Threonine KinasesRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA Splice SitesRNA Splicing Factors3' Untranslated RegionsCDC40 protein, S cerevisiaeCell Cycle ProteinsDNA-Binding ProteinsFungal ProteinsProtein Serine-Threonine KinasesPRP8 protein, S cerevisiaeRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA-Binding ProteinsRNA PrecursorsRNA Splice SitesRNA Splicing FactorsSaccharomyces cerevisiae ProteinsSAD1 protein, S pombeSchizosaccharomyces pombe ProteinsSKY1 protein, S cerevisiae

Identifiers

PMID11565750
PMCPMC1370172
OpenAlexW2103279018

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.