Evidence map›Paper›PMID 11563983›Full record

ArticleThe Biochemical journal2001

Regulatory elements in the FBP1 promoter respond differently to glucose-dependent signals in Saccharomyces cerevisiae.

O Zaragoza, O Vincent, J M Gancedo

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Biochemical journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Carbon source dependent promoters in yeasts.Microbial cell factories · 2014
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

O ZaragozaInstituto de Investigaciones Biomédicas Alberto Sols, CSIC-UAM, Arturo Duperier 4, E-28029 Madrid, Spain.
O Vincent
J M Gancedo
Instituto de Investigaciones Biomédicas Sols-Morreale · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Saccharomyces cerevisiae expression of the fructose-1,6-bisphosphatase-encoding gene, FBP1, is controlled by glucose through the upstream activating sequences UAS1 and UAS2 and the upstream repressing sequence URS1 in its promoter. We have studied the regulation of the proteins that could bind to these elements. We have investigated the role of the putative transcription factors Cat8 and Sip4 in the formation of specific DNA-protein complexes with UAS1 and UAS2, and in the expression of UAS1-lacZ and UAS2-lacZ. The expression of CAT8-lacZ and SIP4-lacZ has been also measured in mig1, tup1 or hxk2 mutants, partially refractory to catabolite repression. We conclude that there is no strict correlation between Cat8 and Sip4 expression or in vitro formation of DNA-protein complexes and expression of UAS1-lacZ and UAS2-lacZ. The URS1 element binds the regulatory protein Mig1, which blocks transcription by recruiting the proteins Cyc8 and Tup1. The pattern of complexes of URS1 with nuclear extracts was dependent on the carbon source and on Cyc8, but not on Tup1; it was also affected by the protein kinase Snf1 and by the exportin Msn5. The repression caused by URS1 in a fusion gene was dependent on Mig1, Cyc8 and Tup1, and on the carbon source in the medium; in a snf1 strain the repression observed was independent of the carbon source. Expression of Mig1 could occur in the absence of Snf1 and was moderately sensitive to glucose. We present data showing that different elements of the regulatory system controlling FBP1 responded differently to the concentration of glucose in the medium.

Indexed as

Basic-Leucine Zipper Transcription FactorsBlotting, NorthernDNA-Binding ProteinsElectrophoretic Mobility Shift AssayFructose-BisphosphataseFungal ProteinsGene Expression Regulation, FungalGlucoseMutationNuclear ProteinsPromoter Regions, GeneticProtein Serine-Threonine KinasesRegulatory Sequences, Nucleic AcidRepressor ProteinsRNA, MessengerSaccharomyces cerevisiaeBasic-Leucine Zipper Transcription FactorsCAT8 protein, S cerevisiaeCYC8 protein, S cerevisiaeDNA-Binding ProteinsFBP1 protein, S cerevisiaeFructose-BisphosphataseFungal ProteinsGlucoseMIG1 protein, S cerevisiaeNuclear ProteinsProtein Serine-Threonine KinasesRepressor ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsSIP4 protein, S cerevisiaeSNF1-related protein kinasesTrans-ActivatorsTranscription FactorsTUP1 protein, S cerevisiae

Identifiers

PMID11563983
PMCPMC1222135
OpenAlexW2060951171

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.