ArticleJournal of biomolecular NMR2001
Application of dipolar coupling data to the refinement of the solution structure of the sarcin-ricin loop RNA.
Article in Journal of biomolecular NMR, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A.Nucleic acids research · 2017Article
- Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering.Chemical reviews · 2016Review
- Platinum-RNA modifications following drug treatment in S. cerevisiae identified by click chemistry and enzymatic mapping.ACS chemical biology · 2014Article
- De novo tertiary structure prediction using RNA123--benchmarking and application to Macugen.Journal of molecular modeling · 2014Article
- Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography.Journal of molecular biology · 2010Article
- Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H-13C residual dipolar coupling on refinement.Journal of biomolecular NMR · 2010Article
- A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila.Nature structural & molecular biology · 2010Article
- Improvement and analysis of computational methods for prediction of residual dipolar couplings.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2009Article
- Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- NMR structure of stem-loop D from human rhinovirus-14.RNA (New York, N.Y.) · 2007Article
- Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings.Journal of biomolecular NMR · 2006Article
- Prediction of molecular alignment of nucleic acids in aligned media.Journal of biomolecular NMR · 2006Article
- Molecular dynamics simulations of sarcin-ricin rRNA motif.Nucleic acids research · 2006Article
- Prediction of charge-induced molecular alignment: residual dipolar couplings at pH 3 and alignment in surfactant liquid crystalline phases.European biophysics journal : EBJ · 2006Article
- Accurate measurement of 15N-13C residual dipolar couplings in nucleic acids.Journal of biomolecular NMR · 2005Article
- Pre-organized structure of viral DNA at the binding-processing site of HIV-1 integrase.Nucleic acids research · 2005Article
- Prediction of charge-induced molecular alignment of biomolecules dissolved in dilute liquid-crystalline phases.Biophysical journal · 2004Article
- Overall structure and sugar dynamics of a DNA dodecamer from homo- and heteronuclear dipolar couplings and 31P chemical shift anisotropy.Journal of biomolecular NMR · 2003Article
- Residual dipolar coupling constants and structure determination of large DNA duplexes.Journal of biomolecular NMR · 2002Article
- Measurement of H2'-C2' and H3'-C3' dipolar couplings in RNA molecules.Journal of biomolecular NMR · 2002Article
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Authors and funding
2 authors.
Funding
Abstract
Residual dipolar couplings can provide the long-range information that most NMR solution structures lack. The use of such data in protein structure determinations is now fairly routine, but even though these data should be much more useful for nucleic acids, their application to nucleic acid structure determination is still in its infancy. Here we present a method for producing accurate, dipolar-refined structures of nucleic acids that is more efficient than those used previously, and apply it to E73, a 29 nucleotide RNA that includes the sarcin-ricin loop from rat 28S rRNA. The results enable us to address the differences between the crystal structure of E73 and the solution structure proposed for it previously.
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