Evidence map›Paper›PMID 11562470›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Structure of rat BCKD kinase: nucleotide-induced domain communication in a mitochondrial protein kinase.

M Machius, J L Chuang, R M Wynn, D R Tomchick, D T Chuang

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
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  4. Review
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  7. Review
  8. Article
  9. Molecular Mechanisms of Enzyme Activation by Monovalent Cations.The Journal of biological chemistry · 2016
    Review
  10. Article
  11. The role of monovalent cations in the ATPase reaction of DNA gyrase.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
  12. Article
  13. Structure-based design and mechanisms of allosteric inhibitors for mitochondrial branched-chain α-ketoacid dehydrogenase kinase.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M MachiusDepartment of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9038, USA. Mischa.Machius@UTSouthwestern.edu
J L Chuang
R M Wynn
D R Tomchick
D T Chuang
The University of Texas Southwestern Medical Center · US

Funding

INBORN ERRORS OF METABOLISM IN CELL CULTURER01DK026758 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI CHUANG, DAVID T · 1986 to 2010
$4.3M
NIDDK NIH HHS DK-26758NIDDK NIH HHS R01 DK026758
6 · The paper itself

Abstract

Mitochondrial protein kinases (mPKs) are molecular switches that down-regulate the oxidation of branched-chain alpha-ketoacids and pyruvate. Elevated levels of these metabolites are implicated in disease states such as insulin-resistant Type II diabetes, branched-chain ketoaciduria, and primary lactic acidosis. We report a three-dimensional structure of a member of the mPK family, rat branched-chain alpha-ketoacid dehydrogenase kinase (BCK). BCK features a characteristic nucleotide-binding domain and a four-helix bundle domain. These two domains are reminiscent of modules found in protein histidine kinases (PHKs), which are involved in two-component signal transduction systems. Unlike PHKs, BCK dimerizes through direct interaction of two opposing nucleotide-binding domains. Nucleotide binding to BCK is uniquely mediated by both potassium and magnesium. Binding of ATP induces disorder-order transitions in a loop region at the nucleotide-binding site. These structural changes lead to the formation of a quadruple aromatic stack in the interface between the nucleotide-binding domain and the four-helix bundle domain, where they induce a movement of the top portion of two helices. Phosphotransfer induces further ordering of the loop region, effectively trapping the reaction product ADP, which explains product inhibition in mPKs. The BCK structure is a prototype for all mPKs and will provide a framework for structure-assisted inhibitor design for this family of kinases.

Indexed as

Adenosine DiphosphateAdenosine TriphosphateAmino Acid SequenceAnimalsBinding SitesCloning, MolecularCrystallography, X-RayDiabetes Mellitus, Type 2Escherichia coliHistidine KinaseHumansMitochondriaModels, MolecularMolecular Sequence DataProtein KinasesProtein Structure, Secondary(3-methyl-2-oxobutanoate dehydrogenase (lipoamide)) kinaseadenosine 5'-O-(3-thiotriphosphate)Adenosine DiphosphateAdenosine TriphosphateHistidine KinaseProtein KinasesRecombinant Proteins

Identifiers

PMID11562470
PMCPMC58710
OpenAlexW2146394845

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.