Evidence map›Paper›PMID 11559823›Full record

ArticleJournal of virology2001

Gene array analysis reveals changes in peripheral nervous system gene expression following stimuli that result in reactivation of latent herpes simplex virus type 1: induction of transcription factor Bcl-3.

D Tsavachidou, W Podrzucki, J Seykora, S L Berger

Abstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

D TsavachidouThe Wistar Institute, Philadelphia, Pennsylvania 19104-4268, USA.
W Podrzucki
J Seykora
S L Berger

Funding

Virology / Animal CoreP50NS033768 · NINDS · WISTAR INSTITUTE · PI , · 1997 to 2007
$7.0M
VIRAL GENETICS OF HERPES SIMPLEX VIRUS LATENCYP01NS033768 · NINDS · WISTAR INSTITUTE · 1995 to 2011
$4.9M
NINDS NIH HHS NS33768NINDS NIH HHS P01 NS033768NINDS NIH HHS P50 NS033768
6 · The paper itself

Abstract

The earliest events within the peripheral mammalian nervous system that cause herpes simplex virus type 1 (HSV-1) to reactivate from latency are unknown but are highly likely to include altered regulation of cellular transcription factors. Using gene array analysis, we have examined the changes that occur in cellular mRNA levels in mouse trigeminal ganglia following explantation, a stimulus that results in HSV-1 reactivation from latency. We have detected both increased and decreased expression levels of particular cellular transcripts, which include RNAs encoding neuronal factors, transcription factors, and factors involved in the cell cycle. Among the transcription factors that are upregulated is Bcl-3, a coactivator for NFkappaB. We have confirmed these increases in Bcl-3 transcription levels using reverse transcription-PCR and S1 nuclease protection assays. In addition, we have shown Bcl-3 upregulation at the protein level. Importantly, Bcl-3 RNA levels were found to increase specifically in neuronal cells within the trigeminal ganglia. We discuss a potential role for this factor in upregulating ICP0 transcription, which is an important viral event for initiation of HSV-1 reactivation.

Indexed as

Virus ActivationAnimalsB-Cell Lymphoma 3 ProteinBlotting, WesternFemaleGene Expression ProfilingHerpesvirus 1, HumanIn Situ HybridizationMiceMice, Inbred BALB CNF-kappa BPeripheral Nervous SystemProto-Oncogene ProteinsRNA, MessengerTime FactorsTranscription FactorsB-Cell Lymphoma 3 ProteinBCL3 protein, humanBcl3 protein, mouseNF-kappa BProto-Oncogene ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID11559823
PMCPMC114562

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.