Evidence map›Paper›PMID 11549760›Full record

ArticleThe Plant cell2001

Secretory bulk flow of soluble proteins is efficient and COPII dependent.

B A Phillipson, P Pimpl, L L daSilva, A J Crofts, J P Taylor, A Movafeghi, D G Robinson, J Denecke

Abstract read
In one paragraph

Article in The Plant cell, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Article
  2. Studying Secretory Protein Synthesis in Nicotiana benthamiana Protoplasts.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  3. Article
  4. Review
  5. On the nature of the plant ER exit sites.Frontiers in plant science · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Annexins as Overlooked Regulators of Membrane Trafficking in Plant Cells.International journal of molecular sciences · 2017
    Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. ER and vacuoles: never been closer.Frontiers in plant science · 2014
    Review

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

B A PhillipsonCentre for Plant Sciences, Leeds Institute for Plant Biotechnology and Agriculture, School of Biology, The University of Leeds, Leeds LS2 9JT, United Kingdom.
P Pimpl
L L daSilva
A J Crofts
J P Taylor
A Movafeghi
D G Robinson
J Denecke

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

COPII-coated vesicles, first identified in yeast and later characterized in mammalian cells, mediate protein export from the endoplasmic reticulum (ER) to the Golgi apparatus within the secretory pathway. In these organisms, the mechanism of vesicle formation is well understood, but the process of soluble cargo sorting has yet to be resolved. In plants, functional complements of the COPII-dependent protein traffic machinery were identified almost a decade ago, but the selectivity of the ER export process has been subject to considerable debate. To study the selectivity of COPII-dependent protein traffic in plants, we have developed an in vivo assay in which COPII vesicle transport is disrupted at two distinct steps in the pathway. First, overexpression of the Sar1p-specific guanosine nucleotide exchange factor Sec12p was shown to result in the titration of the GTPase Sar1p, which is essential for COPII-coated vesicle formation. A second method to disrupt COPII transport at a later step in the pathway was based on coexpression of a dominant negative mutant of Sar1p (H74L), which is thought to interfere with the uncoating and subsequent membrane fusion of the vesicles because of the lack of GTPase activity. A quantitative assay to measure ER export under these conditions was achieved using the natural secretory protein barley alpha-amylase and a modified version carrying an ER retention motif. Most importantly, the manipulation of COPII transport in vivo using either of the two approaches allowed us to demonstrate that export of the ER resident protein calreticulin or the bulk flow marker phosphinothricin acetyl transferase is COPII dependent and occurs at a much higher rate than estimated previously. We also show that the instability of these proteins in post-ER compartments prevents the detection of the true rate of bulk flow using a standard secretion assay. The differences between the data on COPII transport obtained from these in vivo experiments and in vitro experiments conducted previously using yeast components are discussed.

Indexed as

Saccharomyces cerevisiae Proteinsalpha-AmylasesCalcium-Binding ProteinsCalreticulinCOP-Coated VesiclesEndoplasmic ReticulumEscherichia coliFungal ProteinsGene ExpressionGolgi ApparatusGuanine Nucleotide Exchange FactorsLigandsMembrane GlycoproteinsModels, BiologicalMonomeric GTP-Binding ProteinsMutationalpha-AmylasesCalcium-Binding ProteinsCalreticulinFungal ProteinsGuanine Nucleotide Exchange FactorsHDEL receptorhistidyl-aspartyl-glutamyl-leucineLigandsMembrane GlycoproteinsMonomeric GTP-Binding ProteinsOligopeptidesProteinsProtein Sorting SignalsReceptors, PeptideRibonucleoproteinsSaccharomyces cerevisiae ProteinsSAR1 protein, S cerevisiaeSEC12 protein, S cerevisiaeVesicular Transport Proteins

Identifiers

PMID11549760
PMCPMC139448

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.