Evidence map›Paper›PMID 11544236›Full record

ArticleJournal of bacteriology2001

Complete nucleotide sequence of a 43-kilobase genomic island associated with the multidrug resistance region of Salmonella enterica serovar Typhimurium DT104 and its identification in phage type DT120 and serovar Agona.

D Boyd, G A Peters, A Cloeckaert, K S Boumedine, E Chaslus-Dancla, H Imberechts, M R Mulvey

Abstract read
In one paragraph

Article in Journal of bacteriology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 169 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
169citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

169 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  12. Investigation of class 1 integrons and virulence genes in the emergent Salmonella serovar Infantis in Turkey.International microbiology : the official journal of the Spanish Society for Microbiology · 2022
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  19. Genomic Characterization ofPathogens (Basel, Switzerland) · 2021
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109 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

D BoydNational Microbiology Laboratory, Health Canada, Winnipeg, Manitoba R3E 3R2, Canada.
G A Peters
A Cloeckaert
K S Boumedine
E Chaslus-Dancla
H Imberechts
M R Mulvey

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study describes the characterization of the recently described Salmonella genomic island 1 (SGI1) (D. A. Boyd, G. A. Peters, L.-K. Ng, and M. R. Mulvey, FEMS Microbiol. Lett. 189:285-291, 2000), which harbors the genes associated with the ACSSuT phenotype in a Canadian isolate of Salmonella enterica serovar Typhimurium DT104. A 43-kb region has been completely sequenced and found to contain 44 predicted open reading frames (ORFs) which comprised approximately 87% of the total sequence. Fifteen ORFs did not show any significant homology to known gene sequences. A number of ORFs show significant homology to plasmid-related genes, suggesting, at least in part, a plasmid origin for the SGI1, although some with homology to phage-related genes were identified. The SGI1 was identified in a number of multidrug-resistant DT120 and S. enterica serovar Agona strains with similar antibiotic-resistant phenotypes. The G+C content suggests a potential mosaic structure for the SGI1. Emergence of the SGI1 in serovar Agona strains is discussed.

Indexed as

Genome, BacterialAnti-Bacterial AgentsBacteriophage TypingBase SequenceDrug Resistance, MicrobialDrug Resistance, MultipleHumansMicrobial Sensitivity TestsMolecular Sequence DataOpen Reading FramesPlasmidsSalmonella PhagesSalmonella typhimuriumSequence Analysis, DNASerotypingAnti-Bacterial Agents

Identifiers

PMID11544236
PMCPMC95465

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.