Evidence map›Paper›PMID 11544222›Full record

ArticleJournal of bacteriology2001

Binding specificity of the Porphyromonas gingivalis heme and hemoglobin receptor HmuR, gingipain K, and gingipain R1 for heme, porphyrins, and metalloporphyrins.

T Olczak, D W Dixon, C A Genco

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Review
  3. Molecular basis of hemoglobin binding and heme removal inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Local and Systemic Effects ofMicroorganisms · 2023
    Review
  6. Glycation of Host Proteins Increases Pathogenic Potential ofInternational journal of molecular sciences · 2021
    Article
  7. Review
  8. Article
  9. Review
  10. Bioscience reports · 2018
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
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  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

T OlczakDepartment of Medicine, Section of Infectious Diseases, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
D W Dixon
C A Genco
Boston University · USGeorgia State University · US

Funding

VIRUCIDAL AND BACTERICIDAL PORPHYRINS--SYNTHETIC, MOLECULAR, ANALYTICAL STUDIESP01AI045883 · NIAID · EMORY UNIVERSITY · PI COMPANS, RICHARD W · 1999 to 2003
$3.6M
IRON UTILIZATION BY BACTEROIDES GINGIVALISR01DE009161 · NIDCR · MOREHOUSE SCHOOL OF MEDICINE · PI GENCO, CAROLINE A · 1991 to 2005
$1.3M
NIAID NIH HHS AI45883NIAID NIH HHS P01 AI045883NIDCR NIH HHS DE09161NIDCR NIH HHS R01 DE009161
6 · The paper itself

Abstract

Previous genetic and biochemical studies have confirmed that hemoglobin and hemin utilization in Porphyromonas gingivalis is mediated by the outer membrane hemoglobin and heme receptor HmuR, as well as gingipain K (Kgp), a lysine-specific cysteine protease, and gingipain R1 (HRgpA), one of two arginine-specific cysteine proteases. In this study we report on the binding specificity of the recombinant P. gingivalis HmuR protein and native gingipains for hemoglobin, hemin, various porphyrins, and metalloporphyrins as assessed by spectrophotometric assays, by affinity chromatography, and by enzyme-linked immunosorbent assay. Protoporphyrin, mesoporphyrin, deuteroporphyrin, hematoporphyrin, and some of their iron, copper, and zinc derivatives were examined to evaluate the role of both the central metal ion and the peripheral substituents on binding to recombinant HmuR and soluble gingipains. Scatchard analysis of hemin binding to Escherichia coli cells expressing recombinant membrane-associated six-His-tagged HmuR yielded a linear plot with a binding affinity of 2.4 x 10(-5) M. Recombinant E. coli cells bound the iron, copper, and zinc derivatives of protoporphyrin IX (PPIX) with similar affinities, and approximately four times more tightly than PPIX itself, which suggests that the active site of HmuR contains a histidine that binds the metal ion in the porphyrin ring. Furthermore, we found that recombinant HmuR prefers the ethyl and vinyl side chains of the PPIX molecule to either the larger hydroxyethyl or smaller hydrogen side chains. Kgp and HRgpA were demonstrated to bind various porphyrins and metalloporphyrins with affinities similar to those for hemin, indicating that the binding of Kgp and HRgpA to these porphyrins does not require a metal within the porphyrin ring. We did not detect the binding of RgpB, the arginine-specific cysteine protease that lacks a C-terminal hemagglutinin domain, to hemoglobin, porphyrins, or metalloporphyrins. Kgp and HRgpA, but not RgpB, were demonstrated to bind directly to soluble recombinant six-His-tagged HmuR. Several possible mechanisms for the cooperation between outer membrane receptor HmuR and proteases Kgp and HRgpA in hemin and hemoglobin binding and utilization are discussed.

Indexed as

Adhesins, BacterialBlood ProteinsCell MembraneCysteine EndopeptidasesEscherichia coliGingipain Cysteine EndopeptidasesHemagglutininsHemeHemoglobinsMetalloporphyrinsPorphyrinsPorphyromonas gingivalisProtein BindingReceptors, Cell SurfaceRecombinant ProteinsAdhesins, BacterialBlood ProteinsCysteine EndopeptidasesGingipain Cysteine EndopeptidasesHemagglutininsHemehemoglobin-hemin receptorHemoglobinsMetalloporphyrinsPorphyrinsReceptors, Cell SurfaceRecombinant Proteins

Identifiers

PMID11544222
PMCPMC95451
OpenAlexW2119158447

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.