Evidence map›Paper›PMID 11533212›Full record

ArticleJournal of virology2001

Viral evolution in response to the broad-based retroviral protease inhibitor TL-3.

B Bühler, Y C Lin, G Morris, A J Olson, C H Wong, D D Richman, J H Elder, B E Torbett

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. The AutoDock suite at 30.Protein science : a publication of the Protein Society · 2021
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  9. Fragment-based screen against HIV protease.Chemical biology & drug design · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

B BühlerDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA.
Y C Lin
G Morris
A J Olson
C H Wong
D D Richman
J H Elder
B E Torbett
Molecular Biology Consortium · USScripps Research Institute · USUniversity of California, San Diego · US

Funding

Southern California Primary Infection ProgramU01AI043638 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RICHMAN, DOUGLAS D · 1998 to 2010
$21.3M
WOMEN'S HEALTH AGENDAU01AI027670 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENSON, CONSTANCE ANN · 1988 to 2006
$13.7M
STRUCTURAL STUDIES OF FIV PROTEASE INHIBITOR COMPLEXESP01GM048870 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI OLSON, ARTHUR J. · 1992 to 2007
$10.3M
ANTIVIRAL RESISTANCE IN AIDSR37AI029164 · NIAID · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI RICHMAN, DOUGLAS D · 1994 to 2004
$2.0M
MECHANISMS OF RESISTANCE IN CLINICAL ISOLATES OF HIVR01AI029164 · NIAID · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI RICHMAN, DOUGLAS D · 1989 to 1993
–
HU/SCID MICE AS A MODEL FOR HIV 1 INFECTIONR01DK049886 · NIDDK · SCRIPPS RESEARCH INSTITUTE · PI TORBETT, BRUCE EDWARD · 1994 to 1997
–
NIAID NIH HHS AI27670NIAID NIH HHS AI29164NIAID NIH HHS AI38585NIAID NIH HHS AI43638NIAID NIH HHS R37 AI029164NIAID NIH HHS U01 AI027670NIAID NIH HHS U01 AI043638NIDDK NIH HHS DK49886NIGMS NIH HHS P01 GM048870NIGMS NIH HHS P01GM48870
6 · The paper itself

Abstract

TL-3 is a protease inhibitor developed using the feline immunodeficiency virus protease as a model. It has been shown to efficiently inhibit replication of human, simian, and feline immunodeficiency viruses and therefore has broad-based activity. We now demonstrate that TL-3 efficiently inhibits the replication of 6 of 12 isolates with confirmed resistance mutations to known protease inhibitors. To dissect the spectrum of molecular changes in protease and viral properties associated with resistance to TL-3, a panel of chronological in vitro escape variants was generated. We have virologically and biochemically characterized mutants with one (V82A), three (M46I/F53L/V82A), or six (L24I/M46I/F53L/L63P/V77I/V82A) changes in the protease and structurally modeled the protease mutant containing six changes. Virus containing six changes was found to be 17-fold more resistant to TL-3 in cell culture than was wild-type virus but maintained similar in vitro replication kinetics compared to the wild-type virus. Analyses of enzyme activity of protease variants with one, three, and six changes indicated that these enzymes, compared to wild-type protease, retained 40, 47, and 61% activity, respectively. These results suggest that deficient protease enzymatic activity is sufficient for function, and the observed protease restoration might imply a selective advantage, at least in vitro, for increased protease activity.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsCatsGenome, ViralHumansMolecular Sequence DataProtease InhibitorsRetroviridaeProtease Inhibitors

Identifiers

PMID11533212
PMCPMC114517
OpenAlexW2122333445

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.