Evidence map›Paper›PMID 11532936›Full record

ArticleThe EMBO journal2001

The tight interallelic positional coincidence that distinguishes T-cell receptor Jalpha usage does not result from homologous chromosomal pairing during ValphaJalpha rearrangement.

F Davodeau, M Difilippantonio, E Roldan, M Malissen, J L Casanova, C Couedel, J F Morcet, M Merkenschlager, A Nussenzweig, M Bonneville and 1 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Dynamics of the interaction of γδ T cells with their neighbors in vivo.Cellular and molecular life sciences : CMLS · 2011
    Review
  8. Article
  9. Article
  10. Role for rearranged variable gene segments in directing secondary T cell receptor alpha recombination.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

F DavodeauINSERM U.463, Institut de Biologie, 9 quai Moncousu, 44035 Nantes Cedex 01, France.
M Difilippantonio
E Roldan
M Malissen
J L Casanova
C Couedel
J F Morcet
M Merkenschlager
A Nussenzweig
M Bonneville
B Malissen
Inserm · FR

Funding

Intramural NIH HHS Z99 CA999999
6 · The paper itself

Abstract

The T-cell receptor (TCR) alpha locus is thought to undergo multiple cycles of secondary rearrangements that maximize the generation of alphabeta T cells. Taking advantage of the nucleotide sequence of the human Valpha and Jalpha segments, we undertook a locus-wide analysis of TCRalpha gene rearrangements in human alphabeta T-cell clones. In most clones, ValphaJalpha rearrangements occurred on both homologous chromosomes and, remarkably, resulted in the use of two neighboring Jalpha segments. No such interallelic coincidence was found for the position of the two rearranged Valpha segments, and there was only a loose correlation between the 5' or 3' chromosomal position of the Valpha and Jalpha segments used in a given rearrangement. These observations question the occurrence of extensive rounds of secondary Valpha-->Jalpha rearrangements and of a coordinated and polarized usage of the Valpha and Jalpha libraries. Fluorescence in situ hybridization analysis of developing T cells in which TCRalpha rearrangements are taking place showed that the interallelic positional coincidence in Jalpha usage cannot be explained by the stable juxtaposition of homologous Jalpha clusters.

Indexed as

Chromosome MappingGene Rearrangement, alpha-Chain T-Cell Antigen ReceptorGene Rearrangement, beta-Chain T-Cell Antigen Receptor3' Untranslated Regions5' Untranslated RegionsAllelesAnimalsClone CellsCrossing Over, GeneticDNA NucleotidyltransferasesGenes, T-Cell Receptor alphaGenes, T-Cell Receptor betaHumansIn Situ Hybridization, FluorescenceIntronsMice3' Untranslated Regions5' Untranslated RegionsDNA NucleotidyltransferasesVDJ Recombinases

Identifiers

PMID11532936
PMCPMC125590
OpenAlexW2128329490

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.