Evidence map›Paper›PMID 11507229›Full record

ArticleJournal of virology2001

Cytopathicity of human immunodeficiency virus type 1 primary isolates depends on coreceptor usage and not patient disease status.

J F Kreisberg, D Kwa, B Schramm, V Trautner, R Connor, H Schuitemaker, J I Mullins, A B van't Wout, M A Goldsmith

Abstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
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  9. Review
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  15. Article
  16. Article
  17. Article
  18. Prediction of R5, X4, and R5X4 HIV-1 coreceptor usage with evolved neural networks.IEEE/ACM transactions on computational biology and bioinformatics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

J F KreisbergGladstone Institute of Virology and Immunology, University of California, San Francisco, California 94141-9100, USA.
D Kwa
B Schramm
V Trautner
R Connor
H Schuitemaker
J I Mullins
A B van't Wout
M A Goldsmith

Funding

MULTICENTER AIDS COHORT STUDY PATHOGENESIS RESEARCHU01AI037984 · NIAID · JOHNS HOPKINS UNIVERSITY · PI MARGOLICK, JOSEPH B. · 1995 to 2003
$3.1M
HIV FITNESS, VIRULENCE AND EVOLUTIONR01CA086814 · NCI · J. DAVID GLADSTONE INSTITUTES · PI GREENE, WARNER C · 2000 to 2003
$1.1M
HIV CORECEPTORS--FUNCTION, SPECIFICITY AND PATHOGENESISR01AI043695 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI GOLDSMITH, MARK A · 1999 to 2001
$570k
PHENOTYPE AND CORECEPTOR USE IN HIV-1 TRANSMISSIONR29AI041373 · NIAID · AARON DIAMOND AIDS RESEARCH CENTER · PI CONNOR, RUTH INGRID · 1997 to 2000
$116k
NCI NIH HHS CA86814NIAID NIH HHS AI37984NIAID NIH HHS AI41373NIAID NIH HHS AI43695NIAID NIH HHS U01 AI037984
6 · The paper itself

Abstract

It has been hypothesized that human immunodeficiency virus type 1 (HIV-1) evolves toward increased cytopathicity in conjunction with disease progression in infected patients. A viral property known to evolve in some but not all patients is coreceptor utilization, and it has been shown that a switch in coreceptor utilization is sufficient for the development of increased cytopathicity. To test the hypothesis that the evolution of other viral properties also contributes to accelerating cytopathicity in vivo, we used human lymphoid tissue explants to assay the cytopathicity of a panel of primary HIV-1 isolates derived from various stages of disease characterized by the presence or absence of changes in coreceptor preference. We found no evidence of coreceptor-independent increases in cytopathicity in isolates obtained either before coreceptor preference changes or from patients who progressed to AIDS despite an absence of coreceptor evolution. Instead, the cytopathicity of all HIV-1 isolates was determined solely by their coreceptor utilization. These results argue that HIV-1 does not evolve toward increased cytopathicity independently of changes in coreceptor utilization.

Indexed as

CD4-Positive T-LymphocytesCytopathogenic Effect, ViralHIV-1HIV InfectionsHumansLymphocyte DepletionReceptors, CCR5Receptors, CXCR4Receptors, CCR5Receptors, CXCR4

Identifiers

PMID11507229
PMCPMC115129

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.