Evidence map›Paper›PMID 11504872›Full record

ArticleNucleic acids research2001

SOX6 binds CtBP2 to repress transcription from the Fgf-3 promoter.

A Murakami, S Ishida, J Thurlow, J M Revest, C Dickson

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Postnatal Sox6 Regulates Synaptic Function of Cortical Parvalbumin-Expressing Neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  8. Article
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  10. Article
  11. Article
  12. Article
  13. Article
  14. Recurrent miscarriage and micro-RNA among north Indian women.Reproductive sciences (Thousand Oaks, Calif.) · 2015
    Article
  15. Article
  16. Article
  17. Article
  18. Sox6, jack of all trades: a versatile regulatory protein in vertebrate development.Developmental dynamics : an official publication of the American Association of Anatomists · 2011
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

A MurakamiDepartment of Viral Oncology, Institute for Virus Research, Kyoto University, Shogoin, Sakyo-ku, Kyoto 606-8507, Japan.
S Ishida
J Thurlow
J M Revest
C Dickson
Kyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fgf-3 is expressed in a complex pattern during mouse development. Previously, an essential regulatory element PS4A was identified in the promoter region, and shown to bind at least three factors. To identify the transcription factor(s), we used a yeast one-hybrid screen and obtained a novel Sox6 cDNA (SOX6D). When introduced into cells it strongly repressed activity from both an Fgf-3 reporter gene as well as an artificial promoter containing three PS4A elements. In situ hybridisation analysis showed that Sox6 and Fgf-3 are co-expressed in the otic vesicle of E9.5 mouse embryos in a mutually exclusive pattern, consistent with a repression of Fgf-3 transcription by SOX6. To characterise additional factor(s) involved in Fgf-3 gene repression, a yeast two-hybrid screen was used with the N-terminal portion of SOX6D. Mouse CtBP2 cDNA clones were isolated and shown to bind SOX6 in yeast and mammalian cells. Furthermore, mutational analysis of SOX6 showed that binding to CtBP2, and its responsiveness to this co-repressor, were dependent on a short amino acid sequence motif PLNLSS. Co-expression studies in NIH3T3 cells showed that SOX6 and CtBP2 co-operate to repress activity from the Fgf-3 promoter through the enhancer element PS4A. These results show that SOX6 can recruit CtBP2 to repress transcription from the Fgf-3 promoter.

Indexed as

Gene SilencingTranscription FactorsAlcohol OxidoreductasesAmino Acid MotifsAmino Acid SequenceAnimalsCell DifferentiationCell LineCo-Repressor ProteinsDNA-Binding ProteinsEar, InnerEnhancer Elements, GeneticFibroblast Growth Factor 3Fibroblast Growth FactorsGene Expression Regulation, DevelopmentalHigh Mobility Group ProteinsAlcohol OxidoreductasesCo-Repressor ProteinsCtbp2 protein, mouseDNA-Binding ProteinsFgf3 protein, mouseFibroblast Growth Factor 3Fibroblast Growth FactorsHigh Mobility Group ProteinsPhosphoproteinsProto-Oncogene ProteinsRepressor ProteinsRNA, MessengerSox6 protein, mouseSOXD Transcription FactorsTranscription Factors

Identifiers

PMID11504872
PMCPMC55854
OpenAlexW2140152146

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.