Evidence map›Paper›PMID 11483605›Full record

ArticleThe Journal of biological chemistry2001

Structure of pyruvate dehydrogenase kinase. Novel folding pattern for a serine protein kinase.

C N Steussy, K M Popov, M M Bowker-Kinley, R B Sloan, R A Harris, J A Hamilton

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 99 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Crystal structure of the catalytic subunit of bovine pyruvate dehydrogenase phosphatase.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Structure of the human MLH1 N-terminus: implications for predisposition to Lynch syndrome.Acta crystallographica. Section F, Structural biology communications · 2015
    Article
  11. Article
  12. Regulation of pyruvate metabolism and human disease.Cellular and molecular life sciences : CMLS · 2014
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

C N SteussyDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202-5122, USA.
K M Popov
M M Bowker-Kinley
R B Sloan
R A Harris
J A Hamilton
Indiana University School of MedicineIndiana University – Purdue University Indianapolis · USUniversity of Missouri–Kansas City · US

Funding

CHARACTERIZATION OF A NEW FAMILY OF PROTEIN KINASESR01GM051262 · NIGMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI POPOV, KIRILL M · 2000 to 2012
$3.1M
REGULATION OF PYRUVATE DEHYDROGENASE KINASER01DK047844 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI HARRIS, ROBERT A · 1994 to 2008
$2.5M
REGULATION OF PYRUVATE DEHYDROGENASE PHOSPHATASER01DK056898 · NIDDK · UNIVERSITY OF MISSOURI KANSAS CITY · PI POPOV, KIRILL M · 2000 to 2003
$889k
NEW FAMILY OF PROTEIN KINASESR29GM051262 · NIGMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI POPOV, KIRILL M · 1995 to 1999
–
NIDDK NIH HHS DK47844NIDDK NIH HHS DK56898NIDDK NIH HHS R01 DK047844NIDDK NIH HHS R01 DK056898NIGMS NIH HHS GM51262NIGMS NIH HHS R01 GM051262NIGMS NIH HHS R29 GM051262
6 · The paper itself

Abstract

The structure of mitochondrial pyruvate dehydrogenase kinase isozyme 2 is of interest because it represents a family of serine-specific protein kinases that lack sequence similarity with all other eukaryotic protein kinases. Similarity exists instead with key motifs of prokaryotic histidine protein kinases and a family of eukaryotic ATPases. The 2.5-A crystal structure reported here reveals that pyruvate dehydrogenase kinase isozyme 2 has two domains of about the same size. The N-terminal half is dominated by a bundle of four amphipathic alpha-helices, whereas the C-terminal half is folded into an alpha/beta sandwich that contains the nucleotide-binding site. Analysis of the structure reveals this C-terminal domain to be very similar to the nucleotide-binding domain of bacterial histidine kinases, but the catalytic mechanism appears similar to that of the eukaryotic serine kinases and ATPases.

Indexed as

Protein FoldingAdenosine TriphosphateAnimalsBinding SitesCatalysisDimerizationModels, MolecularProtein ConformationProtein KinasesProtein Serine-Threonine KinasesPyruvate Dehydrogenase Acetyl-Transferring KinasePyruvate Dehydrogenase ComplexRatsAdenosine TriphosphatePdk2 protein, ratProtein KinasesProtein Serine-Threonine KinasesPyruvate Dehydrogenase Acetyl-Transferring KinasePyruvate Dehydrogenase Complex

Identifiers

PMID11483605
PMCPMC2147663
OpenAlexW2138710796

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.