Evidence map›Paper›PMID 11483533›Full record

ArticleThe EMBO journal2001

dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora.

E Kouzminova, E U Selker

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 214 citations in OpenAlex.

  1. Review
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  14. Review
  15. The histone code of the fungal genusMicrobial genomics · 2022
    Article
  16. Review
  17. Article
  18. Review
  19. Frontiers in fungal biology · 2022
    Review
  20. DNA Methyltransferases Regulate Pathogenicity ofJournal of fungi (Basel, Switzerland) · 2021
    Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

E KouzminovaDepartment of Biology and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, OR 97403-1229, USA.
E U Selker
University of Illinois Urbana-Champaign · US

Funding

Genetic Aspects of DNA MethylationR37GM035690 · NIGMS · UNIVERSITY OF OREGON · PI SELKER, ERIC U. · 2003 to 2012
$5.2M
GENETIC ASPECTS OF DNA METHYLATIONR01GM035690 · NIGMS · UNIVERSITY OF OREGON · PI SELKER, ERIC U. · 1986 to 2016
$3.3M
NIGMS NIH HHS GM35690NIGMS NIH HHS R01 GM035690NIGMS NIH HHS R37 GM035690
6 · The paper itself

Abstract

To understand better the control of DNA methylation, we cloned and characterized the dim-2 gene of Neurospora crassa, the only eukaryotic gene currently known in which mutations appear to eliminate DNA methylation. The dim-2 gene is responsible for methylation in both symmetrical and asymmetrical sites. We mapped dim-2 between wc-1 and un-10 on linkage group (LG) VIIR and identified the gene by RFLP mapping and genetic complementation. Dim-2 encodes a 1454 amino acid protein including a C-terminal domain homologous to known DNA methyltransferases (MTases) and a novel N-terminal domain. Neither a deletion that removed the first 186 amino acids of the protein nor a mutation in a putative nucleotide binding site abolished function, but a single amino acid substitution in the predicted catalytic site did. Tests for repeat-induced point mutation (RIP) indicated that dim-2 does not play a role in this process, i.e. duplicated sequences are mutated in dim-2 strains, as usual, but the mutated sequences are not methylated, unlike the situation in dim-2+ strains. We conclude that dim-2 encodes an MTase that is responsible for all DNA methylation in vegetative tissues of NEUROSPORA:

Indexed as

DNA-Binding ProteinsDNA MethylationAllelesAmino Acid SequenceBase SequenceChromosome MappingCloning, MolecularCytosineDNA (Cytosine-5-)-MethyltransferasesDNA, FungalDNA HelicasesGenes, FungalGenetic Complementation TestGenetic VariationMolecular Sequence DataNeurospora crassaCytosineDNA-Binding ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA, FungalDNA Helicasesreplication initiator proteinTrans-Activators

Identifiers

PMID11483533
PMCPMC149169
OpenAlexW1995265002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.