Evidence map›Paper›PMID 11477474›Full record

ArticleGenes and immunity2001

Association and linkage of leprosy phenotypes with HLA class II and tumour necrosis factor genes.

M A Shaw, I J Donaldson, A Collins, C S Peacock, Z Lins-Lainson, J J Shaw, F Ramos, F Silveira, J M Blackwell

Abstract read
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Article in Genes and immunity, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Leprosy in the 21st century.Clinical microbiology reviews · 2015
    Review
  7. Article
  8. Role of HLA, KIR, MICA, and cytokines genes in leprosy.BioMed research international · 2013
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Leprosy as a genetic disease.Mammalian genome : official journal of the International Mammalian Genome Society · 2011
    Review
  15. Human polymorphisms as clinical predictors in leprosy.Journal of tropical medicine · 2011
    Article
  16. Leprosy and the human genome.Microbiology and molecular biology reviews : MMBR · 2010
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

M A ShawCambridge Institute for Medical Research, Wellcome Trust/MRC Building, Addenbrookes Hospital, Hills Road, Cambridge CB2 2XY, UK.genmas@leeds.ac.uk
I J Donaldson
A Collins
C S Peacock
Z Lins-Lainson
J J Shaw
F Ramos
F Silveira
J M Blackwell

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous analyses indicate major gene control of susceptibility to leprosy per se and the HLA class II region has been implicated in determining susceptibility and control of clinical phenotype. Segregation analysis using data from 76 Brazilian leprosy multi-case pedigrees (1166 individuals) supported a two locus model as the best fit: a recessive major gene and a recessive modifier gene(s) (single locus vs two locus model, P = 0.0007). Combined segregation and linkage analysis to the major locus, showed strong linkage to HLA class II (HLA-DQB1 P = 0.000002, HLA-DQA1 P = 0.000002, HLA-DRB1 P = 0.0000003) and tumour necrosis factor genes (TNF P = 0.00002, LTA P = 0.003). Extended transmission disequilibrium testing, using multiple affected family members, demonstrated that the common allele TNF*1 of the -308 promoter region polymorphism showed linkage and/or association with disease per se, at a high level of significance (P < 0.0001). Two locus transmission disequilibrium testing suggested susceptibility (TNF*1/LTA*2) and protective (TNF*2/LTA*2) haplotypes in the class iii region. Taken together the segregation and HLA analyses suggest the possibility of more than one susceptibility locus in the MHC.

Indexed as

Genes, MHC Class IIGenetic LinkageBrazilHumansLeprosyPhenotypeTumor Necrosis Factor-alphaTumor Necrosis Factor-alpha

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.