Evidence map›Paper›PMID 11473995›Full record

ArticleJournal of clinical microbiology2001

Identification of 54 mycobacterial species by PCR-restriction fragment length polymorphism analysis of the hsp65 gene.

F Brunello, M Ligozzi, E Cristelli, S Bonora, E Tortoli, R Fontana

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Molecular characterization ofIranian journal of veterinary research · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. A New Single Gene Differential Biomarker forFrontiers in microbiology · 2019
    Article
  12. Review
  13. Nontuberculous mycobacterial lung disease in a high tuberculosis incidence setting in Brazil.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2018
    Article
  14. Mycobacteriosis and Tuberculosis: Laboratory Diagnosis.The open microbiology journal · 2018
    Review
  15. Article
  16. Early detection of Mycobacterium tuberculosis complex in BACTEC MGIT cultures using nucleic acid amplification.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2016
    Article
  17. Article
  18. Epidemiology of nontuberculous mycobacteria among patients with cystic fibrosis in Scandinavia.Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2015
    Observational
  19. Occurrence of Mycobacterium bovis and non-tuberculous mycobacteria (NTM) in raw and pasteurized milk in the northwestern region of Paraná, Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

F BrunelloDipartimento di Patologia, Sezione di Microbiologia, Università di Verona, Italy.
M Ligozzi
E Cristelli
S Bonora
E Tortoli
R Fontana

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A total of 121 reference and clinical strains of both slowly and rapidly growing mycobacteria belonging to 54 species were studied for restriction fragment length polymorphism of a PCR-amplified 439-bp segment of the gene encoding the 65-kDa heat shock protein. Restriction digests were separated by 10% polyacrylamide gel electrophoresis (PAGE). By including a size standard in each sample, the restriction fragment profile was calculated using a computer-aided comparison program. An algorithm describing these 54 species (including 22 species not previously described) is proposed. We found that this assay based on 10% PAGE provided a more precise estimate than that based on agarose gel electrophoresis of the real size of restriction fragments as deduced from the sequence analysis and allowed identification of mycobacteria whose PCR-restriction fragment length polymorphism analysis patterns were unequivocally identified by fragments shorter than 60 bp.

Indexed as

Bacterial ProteinsPolymorphism, Restriction Fragment LengthAlgorithmsChaperonin 60ChaperoninsDNA, BacterialElectrophoresis, Gel, Pulsed-FieldHumansMolecular Sequence DataMycobacteriumMycobacterium InfectionsPolymerase Chain ReactionSequence Analysis, DNABacterial ProteinsChaperonin 60ChaperoninsDNA, Bacterialheat-shock protein 65, Mycobacterium

Identifiers

PMID11473995
PMCPMC88242

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.