Evidence map›Paper›PMID 11473349›Full record

ArticleBiopolymers2001

Structure and topology of a peptide segment of the 6th transmembrane domain of the Saccharomyces cerevisae alpha-factor receptor in phospholipid bilayers.

K G Valentine, S F Liu, F M Marassi, G Veglia, S J Opella, F X Ding, S H Wang, B Arshava, J M Becker, F Naider

Open access · bronzeAbstract read
In one paragraph

Article in Biopolymers, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. NMR studies of membrane proteins.Methods in molecular biology (Clifton, N.J.) · 2010
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

K G ValentineDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104, USA.
S F Liu
F M Marassi
G Veglia
S J Opella
F X Ding
S H Wang
B Arshava
J M Becker
F Naider
City University of New York · USDiscovery Institute · USUniversity of California, San Diego · USUniversity of Pennsylvania · USUniversity of Tennessee at Knoxville · US

Funding

PEPTIDE/CELL INTERACTIONS IN SACCHAROMYCES CEREVISIAER01GM022087 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BECKER, JEFFREY M., NAIDER, FRED R · 1985 to 2011
$4.9M
PEPTIDE-CELL INTERACTIONS IN SACCHAROMYCES CEREVISIAER01GM022086 · NIGMS · COLLEGE OF STATEN ISLD ST. GEORGE CAMPUS · PI NAIDER, FRED R · 1985 to 2006
$2.5M
WORKSHOP ON BIOLOGICAL SOLID STATE NMR SPECTROSCOPYP41RR009793 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI OPELLA, STANLEY J · 1994 to 2002
$2.0M
Peptide-Cell Interactions in Saccharomyces cerevisiaeR56GM022086 · NIGMS · COLLEGE OF STATEN ISLAND · PI NAIDER, FRED R · 2007 to 2007
$371k
Peptide-Cell Interactions in Saccharomyces cerevisiaeR56GM022087 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BECKER, JEFFREY M. · 2007 to 2007
$294k
NCRR NIH HHS P41 RR009793NCRR NIH HHS P41RR09731NIGMS NIH HHS GM 22086NIGMS NIH HHS GM 22087NIGMS NIH HHS R01 GM022086NIGMS NIH HHS R01 GM022087NIGMS NIH HHS R56 GM022086NIGMS NIH HHS R56 GM022087
6 · The paper itself

Abstract

A detailed analysis of the structure of an 18-residue peptide AQSLLVPSIIFILAYSLK [M6(252-269, C252A)] in 1,2-dimyristoyl-sn-glycero-phosphocholine bilayers was carried out using solid state NMR and attenuated total reflection Fourier transform infrared spectroscopy. The peptide corresponds to a portion of the 6th transmembrane domain of the alpha-factor receptor of Saccharomyces cerevisiae. Ten homologs of M6(252-269, C252A) were synthesized in which individual residues were labeled with (15)N. One- and two-dimensional solid state NMR experiments were used to determine the chemical shifts and (1)H-(15)N dipolar coupling constants for the (15)N-labeled peptides in oriented dimyristoylphosphatidylcholine bilayers on stacked glass plates. These parameters were used to calculate the structure and orientation of M6(252-269, C252A) in the bilayers. The results indicate that the carboxyl terminal residues (9-14) are alpha-helical and oriented with an angle of about 8 degrees with respect to the bilayer normal. Independently, an attenuated total reflection Fourier transform infrared spectroscopy analysis on M6(252-269, C252A) in a 1,2-dimyristoyl-sn-glycero-phosphocholine bilayer concluded that the helix tilt angle was about 12.5 degrees. The results on the structure of M6(252-269, C252A) in bilayers are in good agreement with the structure determined in trifluoroethanol/water solutions (B. Arshava et al. Biopolymers, 1998, Vol. 46, pp. 343-357). The present study shows that solid state NMR spectroscopy can provide high resolution information on the structure of transmembrane domains of a G protein-coupled receptor.

Indexed as

Transcription FactorsAmino Acid SequenceBiopolymersLipid BilayersMagnetic Resonance SpectroscopyMating FactorModels, MolecularMolecular Sequence DataNitrogen IsotopesPeptidesPhospholipidsProtein Structure, TertiaryReceptors, Mating FactorReceptors, PeptideSaccharomyces cerevisiaeSpectroscopy, Fourier Transform InfraredBiopolymersLipid BilayersMating FactorNitrogen IsotopesPeptidesPhospholipidsReceptors, Mating FactorReceptors, PeptideTranscription Factors

Identifiers

PMID11473349
PMCPMC3282060
OpenAlexW1968077410

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.