Evidence map›Paper›PMID 11463828›Full record

ArticleMolecular and cellular biology2001

High-copy-number expression of Sub2p, a member of the RNA helicase superfamily, suppresses hpr1-mediated genomic instability.

H Y Fan, R J Merker, H L Klein

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Structures and mRNP remodeling mechanism of the TREX-2 complex.Structure (London, England : 1993) · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Physical proximity of chromatin to nuclear pores prevents harmful R loop accumulation contributing to maintain genome stability.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Article
  8. Transcription and recombination: when RNA meets DNA.Cold Spring Harbor perspectives in biology · 2014
    Review
  9. Telomeric transcripts stimulate telomere recombination to suppress senescence in cells lacking telomerase.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  10. Article
  11. Article
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  15. Article
  16. Review
  17. Article
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  19. Article
  20. Genes with internal repeats require the THO complex for transcription.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

H Y FanDepartment of Biochemistry and Kaplan Cancer Center, New York University Medical Center, New York, New York 10016, USA.
R J Merker
H L Klein
Columbia University Irving Medical Center · US

Funding

GENETIC BEHAVIOR OF REPEATED SEQUENCESR01GM030439 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KLEIN, HANNAH L · 1985 to 2001
$739k
NIGMS NIH HHS GM30439
6 · The paper itself

Abstract

We report on a novel role for a pre-mRNA splicing component in genome stability. The Hpr1 protein, a component of an RNA polymerase II complex and required for transcription elongation, is also required for genome stability. Deletion of HPR1 results in a 1,000-fold increase in genome instability, detected as direct-repeat instability. This instability can be suppressed by the high-copy-number SUB2 gene, which is the Saccharomyces cerevisiae homologue of the human splicing factor hUAP56. Although SUB2 is essential, conditional alleles grown at the permissive temperature complement the essential function of SUB2 yet reveal nonessential phenotypes. These studies have uncovered a role for SUB2 in preventing genome instability. The genomic instability observed in sub2 mutants can be suppressed by high-copy-number HPR1. A deletion mutant of CDC73, a component of a PolII complex, is also unstable for direct repeats. This too is suppressed by high-copy-number SUB2. Thus, defects in both the transcriptional machinery and the pre-mRNA splicing machinery can be sources of genome instability. The ability of a pre-mRNA splicing factor to suppress the hyperrecombination phenotype of a defective PolII complex raises the possibility of integrating transcription, RNA processing, and genome stability or a second role for SUB2.

Indexed as

Saccharomyces cerevisiae ProteinsAdenosine TriphosphatasesAmino Acid SequenceFungal ProteinsGene Expression Regulation, FungalGenome, FungalMolecular Sequence DataNuclear ProteinsRNA Processing, Post-TranscriptionalSaccharomyces cerevisiaeSequence AlignmentAdenosine TriphosphatasesFungal ProteinsHPR1 protein, S cerevisiaeNuclear ProteinsRNA-dependent ATPaseSaccharomyces cerevisiae Proteins

Identifiers

PMID11463828
PMCPMC87268
OpenAlexW2096882347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.