Evidence map›Paper›PMID 11459972›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Stationary-phase mutation in the bacterial chromosome: recombination protein and DNA polymerase IV dependence.

H J Bull, M J Lombardo, S M Rosenberg

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 116 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. RNA Primer Extension Hinders DNA Synthesis byFrontiers in microbiology · 2017
    Article
  10. Conserved rates and patterns of transcription errors across bacterial growth states and lifestyles.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  11. Article
  12. Article
  13. Translesion DNA polymerases.Cold Spring Harbor perspectives in biology · 2013
    Review
  14. Article
  15. Translesion DNA Synthesis.EcoSal Plus · 2012
    Article
  16. Article
  17. Stress-induced mutation via DNA breaks in Escherichia coli: a molecular mechanism with implications for evolution and medicine.BioEssays : news and reviews in molecular, cellular and developmental biology · 2012
    Article
  18. Review
  19. Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

H J BullDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030-3411, USA.
M J Lombardo
S M Rosenberg
Baylor College of Medicine · US

Funding

MOLECULAR MECHANISMS /STRESS-INDUCED MUTATION /E. COLIR01GM053158 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROSENBERG, SUSAN M · 1997 to 2014
$7.4M
DNA REPAIR AND REPLICATION RE START IN VIVOR01CA085777 · NCI · BAYLOR COLLEGE OF MEDICINE · PI ROSENBERG, SUSAN M · 2001 to 2013
$3.0M
CONTROL OF HYPERMUTATION IN STATIONARY-PHASE E COLIF32GM019909 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LOMBARDO, MARY J · 1999 to 2000
$43k
NCI NIH HHS R01 CA085777NCI NIH HHS R01-CA85777NIGMS NIH HHS F32 GM019909NIGMS NIH HHS F32-GM19909NIGMS NIH HHS R01 GM053158NIGMS NIH HHS R01-GM53158
6 · The paper itself

Abstract

Several microbial systems have been shown to yield advantageous mutations in slowly growing or nongrowing cultures. In one assay system, the stationary-phase mutation mechanism differs from growth-dependent mutation, demonstrating that the two are different processes. This system assays reversion of a lac frameshift allele on an F' plasmid in Escherichia coli. The stationary-phase mutation mechanism at lac requires recombination proteins of the RecBCD double-strand-break repair system and the inducible error-prone DNA polymerase IV, and the mutations are mostly -1 deletions in small mononucleotide repeats. This mutation mechanism is proposed to occur by DNA polymerase errors made during replication primed by recombinational double-strand-break repair. It has been suggested that this mechanism is confined to the F plasmid. However, the cells that acquire the adaptive mutations show hypermutation of unrelated chromosomal genes, suggesting that chromosomal sites also might experience recombination protein-dependent stationary-phase mutation. Here we test directly whether the stationary-phase mutations in the bacterial chromosome also occur via a recombination protein- and pol IV-dependent mechanism. We describe an assay for chromosomal mutation in cells carrying the F' lac. We show that the chromosomal mutation is recombination protein- and pol IV-dependent and also is associated with general hypermutation. The data indicate that, at least in these male cells, recombination protein-dependent stationary-phase mutation is a mechanism of general inducible genetic change capable of affecting genes in the bacterial chromosome.

Indexed as

Chromosomes, BacterialEscherichia coli ProteinsRecombination, GeneticAllelesBacterial ProteinsDNA Polymerase betaEndodeoxyribonucleasesExodeoxyribonucleasesExodeoxyribonuclease VGenes, BacterialLactoseMutagenesisRec A RecombinasesRepressor ProteinsBacterial ProteinsDNA Polymerase betaEndodeoxyribonucleasesEscherichia coli ProteinsExodeoxyribonucleasesExodeoxyribonuclease VLactoseRec A RecombinasesRecG protein, E coliRepressor ProteinsruvC protein, E colitetracycline resistance-encoding transposon repressor protein

Identifiers

PMID11459972
PMCPMC37440
OpenAlexW2015916158

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.