Evidence map›Paper›PMID 11452033›Full record

ArticleNucleic acids research2001

Deletion of the CSB homolog, RAD26, yields Spt(-) strains with proficient transcription-coupled repair.

S M Gregory, K S Sweder

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Cockayne syndrome group B cellular and biochemical functions.American journal of human genetics · 2003
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

S M GregoryLaboratory for Cancer Research, Rutgers, The State University of New Jersey, 164 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA.
K S Sweder
Rutgers, The State University of New Jersey · US

Funding

RAD26 FUNCTION IN TRANSCRIPTION COUPLED DNA REPAIRR29GM053717 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI SWEDER, KEVIN S · 1997 to 2001
$296k
NIGMS NIH HHS R29 GM53717
6 · The paper itself

Abstract

It has been previously shown that disruption of RAD26 in yeast strain W303-1B results in a strain that is deficient in transcription-coupled repair (TCR), the preferential repair of the transcribed strand of an expressed gene over the non-transcribed strand and the rest of the genome. RAD26 encodes a protein that is homologous to Cockayne syndrome group B protein (CSB) and is a member of the SWI2/SNF2 family of DNA-dependent ATPases involved in chromatin remodeling. Like the rad26 mutant, cells from Cockayne syndrome patients are defective in TCR. We examined the role of Rad26 in TCR by disrupting RAD26 in two repair-proficient laboratory strains and, remarkably, observed no effect upon TCR. Our results indicate that disruption of RAD26 alone is insufficient to impair TCR. Thus, W303-1B must already possess a mutation that, together with disruption of RAD26, causes a deficiency in TCR. We suggest that other genes are mutated in Cockayne syndrome cells that contribute to the deficiency in TCR. Surprisingly, deletion of RAD26 results in expression of genes that are repressed by flanking transposon delta elements, an Spt(-) phenotype. The delta elements appear to perturb local chromatin structure. Expression of genes flanked by delta elements in rad26Delta mutants is consistent with a role for Rad26 in chromatin remodeling.

Indexed as

Cell Cycle ProteinsGene DeletionSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsTranscriptional Elongation FactorsCell DivisionDNA DamageDNA, FungalDNA HelicasesDNA RepairDNA Repair EnzymesFungal ProteinsHistone ChaperonesHumansMutationNuclear ProteinsCell Cycle ProteinsDNA, FungalDNA HelicasesDNA Repair EnzymesERCC6 protein, humanFungal ProteinsHistone ChaperonesNuclear ProteinsPoly-ADP-Ribose Binding Proteinsrad26 protein, S pombeSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsSPT4 protein, S cerevisiaeSPT6 protein, S cerevisiaeTranscriptional Elongation Factors

Identifiers

PMID11452033
PMCPMC55806
OpenAlexW2117620881

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.