Evidence map›Paper›PMID 11443097›Full record

ArticleJournal of bacteriology2001

The histone deacetylase genes HDA1 and RPD3 play distinct roles in regulation of high-frequency phenotypic switching in Candida albicans.

T Srikantha, L Tsai, K Daniels, A J Klar, D R Soll

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 128 citations in OpenAlex.

  1. Review
  2. Article
  3. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  4. Review
  5. White-opaque switching inMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  6. Article
  7. Role of themBio · 2021
    Article
  8. The Glyoxylate Cycle Is Involved in White-Opaque Switching inJournal of fungi (Basel, Switzerland) · 2021
    Article
  9. Article
  10. The Roles of Chromatin Accessibility in Regulating theJournal of fungi (Basel, Switzerland) · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Chromatin Structure and Drug Resistance inJournal of fungi (Basel, Switzerland) · 2020
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

T SrikanthaDepartment of Biological Sciences, University of Iowa, Iowa City, IA 52242, USA.
L Tsai
K Daniels
A J Klar
D R Soll
University of Iowa · USNational Cancer Institute · US

Funding

NIAID NIH HHS AI2392
6 · The paper itself

Abstract

Five histone deacetylase genes (HDA1, RPD3, HOS1, HOS2, and HOS3) have been cloned from Candida albicans and characterized. Sequence analysis and comparison with 17 additional deacetylases resulted in a phylogenetic tree composed of three major groups. Transcription of the deacetylases HDA1 and RPD3 is down-regulated in the opaque phase of the white-opaque transition in strain WO-1. HOS3 is selectively transcribed as a 2.5-kb transcript in the white phase and as a less-abundant 2.3-kb transcript in the opaque phase. HDA1 and RPD3 were independently deleted in strain WO-1, and both switching between the white and opaque phases and the downstream regulation of phase-specific genes were analyzed. Deletion of HDA1 resulted in an increase in the frequency of switching from the white phase to the opaque phase, but had no effect on the frequency of switching from the opaque phase to the white phase. Deletion of RPD3 resulted in an increase in the frequency of switching in both directions. Deletion of HDA1 resulted in reduced white-phase-specific expression of the EFG1 3.2-kb transcript, but had no significant effect on white-phase-specific expression of WH11 or opaque-phase-specific expression of OP4, SAP1, and SAP3. Deletion of RPD3 resulted in reduced opaque-phase-specific expression of OP4, SAP1, and SAP3 and a slight reduction of white-phase-specific expression of WH11 and 3.2-kb EFG1. Deletion of neither HDA1 nor RPD3 affected the high level of white-phase expression and the low level of opaque-phase expression of the MADS box protein gene MCM1, which has been implicated in the regulation of opaque-phase-specific gene expression. In addition, there was no effect on the phase-regulated levels of expression of the other deacetylase genes. These results demonstrate that the two deacetylase genes HDA1 and RPD3 play distinct roles in the suppression of switching, that the two play distinct and selective roles in the regulation of phase-specific genes, and that the deacetylases are in turn regulated by switching.

Indexed as

Intracellular Signaling Peptides and ProteinsNuclear ProteinsPlant ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsAmino Acid SequenceCandida albicansCarrier ProteinsCloning, MolecularDNA-Binding ProteinsFungal ProteinsGene ExpressionHistone DeacetylasesMinichromosome Maintenance 1 ProteinMolecular Sequence DataCarrier ProteinsDNA-Binding ProteinsFungal ProteinsHDA1 protein, S cerevisiaeHistone DeacetylasesHos2 protein, S pombeIntracellular Signaling Peptides and ProteinsMinichromosome Maintenance 1 ProteinNuclear ProteinsPlant ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsTranscription FactorsTUP1 protein, S cerevisiae

Identifiers

PMID11443097
PMCPMC95357
OpenAlexW2094691111

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.