Evidence map›Paper›PMID 11432820›Full record

ArticleThe EMBO journal2001

Specificity of GlcNAc-PI de-N-acetylase of GPI biosynthesis and synthesis of parasite-specific suicide substrate inhibitors.

T K Smith, A Crossman, C N Borissow, M J Paterson, A Dix, J S Brimacombe, M A Ferguson

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. GlcNAc De-Applied and environmental microbiology · 2019
    Article
  3. Targeting the GPI biosynthetic pathway.Pathogens and global health · 2018
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Lipid metabolism in Trypanosoma brucei.Molecular and biochemical parasitology · 2010
    Review
  11. Drug targets in Leishmania.Journal of parasitic diseases : official organ of the Indian Society for Parasitology · 2010
    Article
  12. Trypanosome glycosylphosphatidylinositol biosynthesis.The Korean journal of parasitology · 2009
    Review
  13. Article
  14. Secretory pathway of trypanosomatid parasites.Microbiology and molecular biology reviews : MMBR · 2002
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

T K SmithDivision of Biological Chemistry & Molecular Microbiology, The School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
A Crossman
C N Borissow
M J Paterson
A Dix
J S Brimacombe
M A Ferguson
University of Dundee · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The substrate specificities of Trypanosoma brucei and human (HeLa) GlcNAc-PI de-N-acetylases were determined using 24 substrate analogues. The results show the following. (i) The de-N-acetylases show little specificity for the lipid moiety of GlcNAc-PI. (ii) The 3'-OH group of the GlcNAc residue is essential for substrate recognition whereas the 6'-OH group is dispensable and the 4'-OH, while not required for recognition, cannot be epimerized or substituted. (iii) The parasite enzyme can act on analogues containing betaGlcNAc or aromatic N-acyl groups, whereas the human enzyme cannot. (iv) Three GlcNR-PI analogues are de-N-acetylase inhibitors, one of which is a suicide inhibitor. (v) The suicide inhibitor most likely forms a carbamate or thiocarbamate ester to an active site hydroxy-amino acid or Cys or residue such that inhibition is reversed by certain nucleophiles. These and previous results were used to design two potent (IC50 = 8 nM) parasite-specific suicide substrate inhibitors. These are potential lead compounds for the development of anti-protozoan parasite drugs.

Indexed as

AcetatesAcetylationAcetylglucosamineAmidohydrolasesAnimalsDrug DesignEnzyme InhibitorsGlycosylphosphatidylinositolsHeLa CellsHumansKineticsMolecular ConformationStructure-Activity RelationshipSubstrate SpecificityTrypanosoma brucei bruceiAcetatesAcetylglucosamineAmidohydrolasesEnzyme InhibitorsGlycosylphosphatidylinositolsN-acetylglucosaminyl-phosphatidylinositol de-N-acetylase

Identifiers

PMID11432820
PMCPMC125529
OpenAlexW2139962353

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.