Evidence map›Paper›PMID 11427727›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Expression of error-prone polymerases in BL2 cells activated for Ig somatic hypermutation.

V Poltoratsky, C J Woo, B Tippin, A Martin, M F Goodman, M D Scharff

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Activation-induced cytidine deaminase (AID) promotes B cell lymphomagenesis in Emu-cmyc transgenic mice.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  10. DNA replication to aid somatic hypermutation.Advances in experimental medicine and biology · 2007
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Lineage specificity of gene expression patterns.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  16. Hepatitis C virus induces a mutator phenotype: enhanced mutations of immunoglobulin and protooncogenes.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  17. Article
  18. Article
  19. Article
  20. Somatic hypermutation of the B cell receptor genes B29 (Igbeta, CD79b) and mb1 (Igalpha, CD79a).Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

V PoltoratskyDepartment of Cell Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA> .
C J Woo
B Tippin
A Martin
M F Goodman
M D Scharff
Albert Einstein College of Medicine · USUniversity of Southern California · US

Funding

VASCULAR RISK AND COGNITIVE STATUS IN A LATINO POPULATIONP50AG005142 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ARANDA, MARIA P. · 1985 to 2019
$41.0M
TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
IMMUNOLOGY AND IMMUNUNOOCOLOGY TRAINING PROGRAMT32CA009173 · NCI · YESHIVA UNIVERSITY · PI NATHENSON, STANLEY G · 1985 to 2009
$5.8M
ERROR CORRECTION IN DNA SYNTHESIS--A BIOCHEMICAL STUDYR37GM021422 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 2000 to 2009
$3.5M
OKAZAKI FRAGMENT PROCESSING IN GENETIC STABILITYP01AG017179 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON FREDRIC · 2000 to 2002
$3.5M
TRAINING IN ENDOCRINOLOGY AND NEUROIOLOGY OF AGINGT32AG000093 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FINCH, CALEB E · 1985 to 2007
$2.9M
ERROR CORRECTION IN DNA SYNTHESIS: A BIOCHEMICAL STUDYR01GM021422 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 1985 to 2014
$1.6M
MUTATIONAL MECHANISMS OF REPETITIVE DNA IN HUMAN CELLSR01CA073649 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI ECKERT, KRISTIN A · 1997 to 2001
$285k
ADAMHA HHS ADRC-AG05142NCI NIH HHS 5T32CA09173NCI NIH HHS CA73649NCI NIH HHS T32 CA009173NIA NIH HHS P01 AG17179NIA NIH HHS P50 AG005142NIA NIH HHS T32 AG000093NIA NIH HHS T32 AG00093NIGMS NIH HHS GM21422NIGMS NIH HHS GM4554NIGMS NIH HHS R01 GM021422NIGMS NIH HHS R37 GM021422NIGMS NIH HHS T32 GM007491NIGMS NIH HHS T32GM 07491
6 · The paper itself

Abstract

High affinity antibodies are generated in mice and humans by means of somatic hypermutation (SHM) of variable (V) regions of Ig genes. Mutations with rates of 10(-5)--10(-3) per base pair per generation, about 10(6)-fold above normal, are targeted primarily at V-region hot spots by unknown mechanisms. We have measured mRNA expression of DNA polymerases iota, eta, and zeta by using cultured Burkitt's lymphoma (BL)2 cells. These cells exhibit 5-10-fold increases in heavy-chain V-region mutations targeted only predominantly to RGYW (R = A or G, Y = C or T, W = T or A) hot spots if costimulated with T cells and IgM crosslinking, the presumed in vivo requirements for SHM. An approximately 4-fold increase pol iota mRNA occurs within 12 h when cocultured with T cells and surface IgM crosslinking. Induction of pols eta and zeta occur with T cells, IgM crosslinking, or both stimuli. The fidelity of pol iota was measured at RGYW hot- and non-hot-spot sequences situated at nicks, gaps, and double-strand breaks. Pol iota formed T x G mispairs at a frequency of 10(-2), consistent with SHM-generated C to T transitions, with a 3-fold increased error rate in hot- vs. non-hot-spot sequences for the single-nucleotide overhang. The T cell and IgM crosslinking-dependent induction of pol iota at 12 h may indicate an SHM "triggering" event has occurred. However, pols iota, eta, and zeta are present under all conditions, suggesting that their presence is not sufficient to generate mutations because both T cell and IgM stimuli are required for SHM induction.

Indexed as

MutationAnimalsB-LymphocytesDNA-Directed DNA PolymeraseGenes, ImmunoglobulinHumansImmunoglobulin Variable RegionMiceMolecular Sequence DataTumor Cells, CulturedDNA-Directed DNA PolymeraseImmunoglobulin Variable Region

Identifiers

PMID11427727
PMCPMC35453
OpenAlexW1984314739

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.