Evidence map›Paper›PMID 11416146›Full record

ArticleMolecular and cellular biology2001

DNA recognition by the herpes simplex virus transactivator VP16: a novel DNA-binding structure.

R Babb, C C Huang, D J Aufiero, W Herr

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

R BabbGraduate Program in Genetics, State University of New York at Stony Brook, Stony Brook, New York 11794, USA.
C C Huang
D J Aufiero
W Herr
Cold Spring Harbor Laboratory · USStony Brook University · US

Funding

VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
NCI NIH HHS CA-13106NCI NIH HHS P01 CA013106
6 · The paper itself

Abstract

Upon infection, the herpes simplex virus (HSV) transcriptional activator VP16 directs the formation of a multiprotein-DNA complex-the VP16-induced complex-with two cellular proteins, the host cell factor HCF-1 and the POU domain transcription factor Oct-1, on TAATGARAT-containing sequences found in the promoters of HSV immediate-early genes. HSV VP16 contains carboxy-terminal sequences important for transcriptional activation and a central conserved core that is important for VP16-induced complex assembly. On its own, VP16 displays little, if any, sequence-specific DNA-binding activity. We show here that, within the VP16-induced complex, however, the VP16 core has an important role in DNA binding. Mutation of basic residues on the surface of the VP16 core reveals a novel DNA-binding surface with essential residues which are conserved among VP16 orthologs. These results illuminate how, through association with DNA, VP16 is able to interpret cis-regulatory signals in the DNA to direct the assembly of a multiprotein-DNA transcriptional regulatory complex.

Indexed as

Amino Acid SubstitutionAnimalsBinding SitesCell LineDeoxyribonuclease IDNADNA-Binding ProteinsDNA FootprintingEscherichia coliHerpes Simplex Virus Protein Vmw65Host Cell Factor C1Models, MolecularOctamer Transcription Factor-1ProteinsProtein Structure, SecondaryRecombinant Fusion ProteinsDeoxyribonuclease IDNADNA-Binding ProteinsHerpes Simplex Virus Protein Vmw65Host Cell Factor C1Octamer Transcription Factor-1ProteinsRecombinant Fusion ProteinsTranscription Factors

Identifiers

PMID11416146
PMCPMC87145
OpenAlexW2159193483

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.