Evidence map›Paper›PMID 11406603›Full record

ArticleThe EMBO journal2001

Role of the non-homologous DNA end joining pathway in the early steps of retroviral infection.

L Li, J M Olvera, K E Yoder, R S Mitchell, S L Butler, M Lieber, S L Martin, F D Bushman

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 207 papers.

0numbers the graph read from it
0cells of the map it votes in
207citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

207 citing papers in PubMed, 357 citations in OpenAlex.

  1. Review
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  12. Structural rearrangements in the nucleus localize latent HIV proviruses to a perinucleolar compartment supportive of reactivation.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  17. The Integrase: An Overview of a Key Player Enzyme in the Antiviral Scenario.International journal of molecular sciences · 2023
    Review
  18. Article
  19. Article
  20. Review

147 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

L LiInfectious Disease Laboratory, The Salk Institute, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA.
J M Olvera
K E Yoder
R S Mitchell
S L Butler
M Lieber
S L Martin
F D Bushman
Torrey Pines Institute For Molecular Studies · US

Funding

MECHANISM OF HIV DNA INTEGRATIONR01AI034786 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 1993 to 2005
$2.3M
STRUCTURE BASED DESIGN OF INHIBITORS OF HIV-1 INTEGRATIONP01GM056553 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI MCCAMMON, J A · 1997 to 2001
$1.8M
NIAID NIH HHS AI34786NIAID NIH HHS R01 AI034786NIGMS NIH HHS GM56553
6 · The paper itself

Abstract

Early after infection, the retroviral RNA genome is reverse transcribed to generate a linear cDNA copy, then that copy is integrated into a chromosome of the host cell. We report that unintegrated viral cDNA is a substrate for the host cell non-homologous DNA end joining (NHEJ) pathway, which normally repairs cellular double-strand breaks by end ligation. NHEJ activity was found to be required for an end-ligation reaction that circularizes a portion of the unintegrated viral cDNA in infected cells. Consistent with this, the NHEJ proteins Ku70 and Ku80 were found to be bound to purified retroviral replication intermediates. Cells defective in NHEJ are known to undergo apoptosis in response to retroviral infection, a response that we show requires reverse transcription to form the cDNA genome but not subsequent integration. We propose that the double-strand ends present in unintegrated cDNA promote apoptosis, as is known to be the case for chromosomal double-strand breaks, and cDNA circularization removes the pro-apoptotic signal.

Indexed as

Antigens, NuclearDNA Helicases3T3 CellsAnimalsApoptosisCell Line, TransformedCHO CellsCricetinaeDNA-Binding ProteinsDNA, ViralHIV-1HumansKu AutoantigenMiceMoloney murine leukemia virusNuclear ProteinsAntigens, NuclearDNA-Binding ProteinsDNA HelicasesDNA, ViralKu AutoantigenNuclear ProteinsXRCC5 protein, humanXrcc6 protein, humanXrcc6 protein, mouse

Identifiers

PMID11406603
PMCPMC150207
OpenAlexW1988463127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.