Evidence map›Paper›PMID 11406576›Full record

ArticleThe EMBO journal2001

Novel recognition mode between Vav and Grb2 SH3 domains.

M Nishida, K Nagata, Y Hachimori, M Horiuchi, K Ogura, V Mandiyan, J Schlessinger, F Inagaki

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 113 citations in OpenAlex.

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  20. Studies of novel interactions between Nck and VAV SH3 domains.Communicative & integrative biology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

M NishidaDepartment of Structural Biology, Graduate School of Pharmaceutical Sciences, Hokkaido University, N-12, W-6, Kita-ku, Sapporo 060-0812, CREST, Japan.
K Nagata
Y Hachimori
M Horiuchi
K Ogura
V Mandiyan
J Schlessinger
F Inagaki
Hokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vav is a guanine nucleotide exchange factor for the Rho/Rac family that is expressed exclusively in hematopoietic cells. Growth factor receptor-bound protein 2 (Grb2) has been proposed to play important roles in the membrane localization and activation of Vav through dimerization of its C-terminal Src-homology 3 (SH3) domain (GrbS) and the N-terminal SH3 domain of Vav (VavS). The crystal structure of VavS complexed with GrbS has been solved. VavS is distinct from other SH3 domain proteins in that its binding site for proline-rich peptides is blocked by its own RT loop. One of the ends of the VavS beta-barrel forms a concave hydrophobic surface. The GrbS components make a contiguous complementary interface with the VavS surface. The binding site of GrbS for VavS partially overlaps with the canonical binding site for proline-rich peptides, but is definitely different. Mutations at the interface caused a decrease in the binding affinity of VavS for GrbS by 4- to 40-fold. The structure reveals how GrbS discriminates VavS specifically from other signaling molecules without binding to the proline-rich motif.

Indexed as

Adaptor Proteins, Signal TransducingCell Cycle Proteinssrc Homology DomainsAmino Acid SequenceAnimalsCrystallography, X-RayErbB ReceptorsGRB2 Adaptor ProteinGuanine Nucleotide Exchange FactorsHumansMiceModels, MolecularMolecular Sequence DataMutagenesisPeptidesProlineAdaptor Proteins, Signal TransducingCell Cycle ProteinsErbB ReceptorsGRB2 Adaptor ProteinGRB2 protein, humanGrb2 protein, mouseGuanine Nucleotide Exchange FactorsPeptidesProlineProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-vavRecombinant Fusion ProteinsVAV1 protein, humanVav1 protein, mouse

Identifiers

PMID11406576
PMCPMC150196
OpenAlexW2063224782

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.