Evidence map›Paper›PMID 11404326›Full record

ArticleGenetics2001

The Saccharomyces cerevisiae small GTPase, Gsp1p/Ran, is involved in 3' processing of 7S-to-5.8S rRNA and in degradation of the excised 5'-A0 fragment of 35S pre-rRNA, both of which are carried out by the exosome.

N Suzuki, E Noguchi, N Nakashima, M Oki, T Ohba, A Tartakoff, M Ohishi, T Nishimoto

Abstract read
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. From in vitro to in vivo reprogramming for neural transdifferentiation: An approach for CNS tissue remodeling using stem cell technology.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

N SuzukiDepartment of Molecular Biology, Graduate School of Medical Science, Kyushu University, 3-1-1 Maedashi, Higashiku, Fukuoka 812-8582, Japan.
E Noguchi
N Nakashima
M Oki
T Ohba
A Tartakoff
M Ohishi
T Nishimoto
Kyushu University · JPUniversity School · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dis3p, a subunit of the exosome, interacts directly with Ran. To clarify the relationship between the exosome and the RanGTPase cycle, a series of temperature-sensitive Saccharomyces cerevisiae dis3 mutants were isolated and their 5.8S rRNA processing was compared with processing in strains with mutations in a S. cerevisiae Ran homologue, Gsp1p. In both dis3 and gsp1 mutants, 3' processing of 7S-to-5.8S rRNA was blocked at three identical sites in an allele-specific manner. In contrast, the 5' end of 5.8S rRNA was terminated normally in gsp1 and in dis3. Inhibition of 5.8S rRNA maturation in gsp1 was rescued by overexpression of nuclear exosome components Dis3p, Rrp4p, and Mtr4p, but not by a cytoplasmic exosome component, Ski2p. Furthermore, gsp1 and dis3 accumulated the 5'-A0 fragment of 35S pre-rRNA, which is also degraded by the exosome, and the level of 27S rRNA was reduced. Neither 5.8S rRNA intermediates nor 5'-A0 fragments were observed in mutants defective in the nucleocytoplasmic transport, indicating that Gsp1p regulates rRNA processing through Dis3p, independent of nucleocytoplasmic transport.

Indexed as

Saccharomyces cerevisiae ProteinsActive Transport, Cell NucleusAllelesCell NucleusCytoplasmDEAD-box RNA HelicasesDNA PrimersExoribonucleasesExosome Multienzyme Ribonuclease ComplexFungal ProteinsGenotypeGTP PhosphohydrolasesModels, GeneticMonomeric GTP-Binding ProteinsMutagenesis, Site-DirectedMutation7SL RNADEAD-box RNA HelicasesDIS3 protein, S cerevisiaeDNA PrimersExoribonucleasesExosome Multienzyme Ribonuclease ComplexFungal ProteinsGSP1 protein, S cerevisiaeGTP PhosphohydrolasesMonomeric GTP-Binding ProteinsMTR4 protein, S cerevisiaeNuclear ProteinsRNA-Binding ProteinsRNA HelicasesRNA, MessengerRNA, RibosomalRNA, Ribosomal, 5.8SRNA, Small CytoplasmicSaccharomyces cerevisiae ProteinsSignal Recognition Particle

Identifiers

PMID11404326
PMCPMC1461697
OpenAlexW2126349804

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.