Evidence map›Paper›PMID 11401987›Full record

ArticleInfection and immunity2001

Cloning and expression of two novel hemin binding protein genes from Treponema denticola.

X Xu, S C Holt, D Kolodrubetz

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. The Potential Roles of Prophages in the Pathogenicity ofAntibiotics (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

X XuDepartment of Microbiology, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
S C Holt
D Kolodrubetz
The University of Texas Health Science Center at San Antonio · US

Funding

ORAL TREPONEMES IN PERIODONTAL DISEASES--HIV AND ANUGR01DE011368 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI EBERSOLE, JEFFREY L · 1994 to 2002
$748k
46 KDA PROTEIN FROM TREPONEMA DENTICOLAR03DE011771 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI CHU, LIANRUI · 1996 to 1997
–
NIDCR NIH HHS DE11368NIDCR NIH HHS DE11771NIDCR NIH HHS R01 DE011368
6 · The paper itself

Abstract

Treponema denticola does not appear to produce siderophores, so it must acquire iron by other pathways. Indeed, T. denticola has been shown to have an iron-regulated 44-kDa outer membrane protein (HbpA) with hemin binding ability. To characterize the HbpA protein, its gene was cloned from genomic DNA libraries of T. denticola. Sequence analysis of the hbpA open reading frame indicated that it encoded a 42.8-kDa protein with a 23-amino-acid signal peptide. HbpA has no significant homology to any proteins in the databases. Southern blot analysis demonstrated that hbpA is present in several T. denticola ATCC strains and clinical isolates, but not in Treponema pectinovorum, Treponema socranskii, or Escherichia coli. HbpA, expressed as a recombinant protein in E. coli and purified by antibody affinity chromatography, has hemin binding activity as determined by lithium dodecyl sulfate-polyacrylamide gel electrophoresis with tetramethylbenzidine staining. Northern blot analysis showed that there were two hbpA-containing transcripts, of approximately 1.3 and 2.6 kb, and that the RNA levels were low-iron induced. Interestingly, the 2.6-kb mRNA also encoded a second protein with significant homology to hbpA. This downstream gene, called hbpB, was cloned and sequenced and its product was expressed as a fusion protein in E. coli. The hbpB gene product is 49% identical to HbpA and binds hemin. Thus, T. denticola has two novel hemin binding proteins which may be part of a previously unrecognized iron acquisition pathway.

Indexed as

Genes, BacterialAmino Acid SequenceBacterial ProteinsBase SequenceBenzaldehydesCarrier ProteinsCloning, MolecularDNA, BacterialElectrophoresis, Polyacrylamide GelEscherichia coliGene ExpressionHeminHumansIronLipoproteinsMolecular Sequence Data2,4,5-trimethoxybenzaldehydeBacterial ProteinsBenzaldehydesCarrier ProteinsDNA, Bacterialdodecyl sulfateHbpA protein, Haemophilus influenzaeHeminIronLipoproteinsSodium Dodecyl Sulfate

Identifiers

PMID11401987
PMCPMC98520
OpenAlexW2144578188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.