Evidence map›Paper›PMID 11401955›Full record

ArticleInfection and immunity2001

Differential gene expression from two transcriptional units in the cag pathogenicity island of Helicobacter pylori.

E A Joyce, J V Gilbert, K A Eaton, A Plaut, A Wright

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

E A JoyceDepartment of Microbiology and Molecular Biology, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.
J V Gilbert
K A Eaton
A Plaut
A Wright
Tufts Medical Center · USTufts University · USThe Ohio State University · US

Funding

PILOT AND FEASIBILITY STUDIESP30DK034928 · NIDDK · TUFTS MEDICAL CENTER · PI KANE, ANNE VIRGINIA · 1986 to 2007
$8.5M
HOST AND BACTERIAL FACTORS IN DISEASE DUE TO H PYLORIR01AI043643 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI EATON, KATHRYN A. · 1998 to 2010
$2.1M
PATHOGENESIS OF GASTRIC ULCERATION DUE TO H PYLORIR29DK045340 · NIDDK · OHIO STATE UNIVERSITY · PI EATON, KATHRYN A · 1995 to 1999
–
NIAID NIH HHS R01 AI043643NIAID NIH HHS R01 AI43643NIDDK NIH HHS DK-3702NIDDK NIH HHS P30 DK034928NIDDK NIH HHS P30DK34928NIDDK NIH HHS R29 DK-45340
6 · The paper itself

Abstract

Infection with Helicobacter pylori strains containing the cag Pathogenicity Island (cag PAI) is strongly correlated with the development of severe gastric disease, including gastric and duodenal ulceration, mucosa-associated lymphoid tissue lymphoma, and gastric carcinoma. Although in vitro studies have demonstrated that the expression of genes within the cag PAI leads to the activation of a strong host inflammatory response, the functions of most cag gene products and how they work in concert to promote an immunological response are unknown. We developed a transcriptional reporter that utilizes urease activity and in which nine putative regulatory sequences from the cag PAI were fused to the H. pylori ureB gene. These fusions were introduced in single copies onto the H. pylori chromosome without disruption of the cag PAI. Our analysis indicated that while each regulatory region confers a reproducible amount of promoter activity under laboratory conditions, they differ widely in levels of expression. Transcription initiating upstream of cag15 and upstream of cag21 is induced when the respective fusion strains are cocultured with an epithelial cell monolayer. Results of mouse colonization experiments with an H. pylori strain carrying the cag15-ureB fusion suggested that this putative regulatory region appears to be induced in vivo, demonstrating the importance of the urease reporter as a significant development toward identifying in vivo-induced gene expression in H. pylori.

Indexed as

Gene Expression ProfilingAnimalsBase SequenceDNA, BacterialFemaleGenes, ReporterHelicobacter pyloriHumansMiceMice, Inbred C57BLMolecular Sequence DataPromoter Regions, GeneticRecombinant Fusion ProteinsTranscription, GeneticTumor Cells, CulturedUreaseDNA, BacterialRecombinant Fusion ProteinsUrease

Identifiers

PMID11401955
PMCPMC98452
OpenAlexW2146895619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.