Evidence map›Paper›PMID 11390658›Full record

ArticleMolecular and cellular biology2001

RAG transposase can capture and commit to target DNA before or after donor cleavage.

M B Neiditch, G S Lee, M A Landree, D B Roth

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Target capture during Mos1 transposition.The Journal of biological chemistry · 2014
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  13. Targeted transposition by the V(D)J recombinase.Molecular and cellular biology · 2002
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

M B NeiditchDepartment of Immunology, Baylor College of Medicine, Houston, Texas 77030, USA.
G S Lee
M A Landree
D B Roth
Baylor College of Medicine · USInstitute of Molecular and Cell Biology · RU

Funding

Mechanisms of V(D) J RecombinationR01AI036420 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ROTH, DAVID B. · 1994 to 2009
$2.6M
MOLECULAR AND CELLULAR MECHANISMS OF HOST DEFENSET32AI007495 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI TAN, TSE-HUA · 1996 to 2011
$2.4M
NIAID NIH HHS AI-36420NIAID NIH HHS R01 AI036420NIAID NIH HHS T32 AI007495NIAID NIH HHS T32-AI07495
6 · The paper itself

Abstract

The discovery that the V(D)J recombinase functions as a transposase in vitro suggests that transposition by this system might be a potent source of genomic instability. To gain insight into the mechanisms that regulate transposition, we investigated a phenomenon termed target commitment that reflects a functional association between the RAG transposase and the target DNA. We found that the V(D)J recombinase is quite promiscuous, forming productive complexes with target DNA both before and after donor cleavage, and our data indicate that the rate-limiting step for transposition occurs after target capture. Formation of stable target capture complexes depends upon the presence of active-site metal binding residues (the DDE motif), suggesting that active-site amino acids in RAG-1 are critical for target capture. The ability of the RAG transposase to commit to target prior to cleavage may result in a preference for transposition into nearby targets, such as immunoglobulin and T-cell receptor loci. This could bias transposition toward relatively "safe" regions of the genome. A preference for localized transposition may also have influenced the evolution of the antigen receptor loci.

Indexed as

Genes, RAG-1Recombination, GeneticAnimalsCalciumCHO CellsCricetinaeDNADNA-Binding ProteinsDNA NucleotidyltransferasesKineticsMagnesiumProtein BindingRecombinant Fusion ProteinsVDJ RecombinasesCalciumDNADNA-Binding ProteinsDNA NucleotidyltransferasesMagnesiumRecombinant Fusion ProteinsVDJ Recombinases

Identifiers

PMID11390658
PMCPMC87090
OpenAlexW2116863396

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.