Evidence map›Paper›PMID 11358870›Full record

ArticleGenes & development2001

Pax6 and SOX2 form a co-DNA-binding partner complex that regulates initiation of lens development.

Y Kamachi, M Uchikawa, A Tanouchi, R Sekido, H Kondoh

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 145 papers.

0numbers the graph read from it
0cells of the map it votes in
145citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

145 citing papers in PubMed, 399 citations in OpenAlex.

  1. Review
  2. dentification and characterization of novelBMJ open diabetes research & care · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Enhancer Activation by Transcription Factors and Underlying Mechanisms.Results and problems in cell differentiation · 2024
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Sox8 remodels the cranial ectoderm to generate the ear.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Article

85 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Y KamachiInstitute for Molecular and Cellular Biology, Osaka University, Suita, Osaka 565-0871, Japan. yusuke@imcb.osaka-u.ac.jp
M Uchikawa
A Tanouchi
R Sekido
H Kondoh
Osaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pax6 is a key transcription factor in eye development, particularly in lens development, but its molecular action has not been clarified. We demonstrate that Pax6 initiates lens development by forming a molecular complex with SOX2 on the lens-specific enhancer elements, e.g., the delta-crystallin minimal enhancer DC5. DC5 shows a limited similarity to the binding consensus sequence of Pax6 and is bound poorly by Pax6 alone. However, Pax6 binds cooperatively with SOX2 to the DC5 sequence, resulting in formation of a high-mobility form of ternary complex in vitro, which correlates with the enhancer activation in vivo. We observed Pax6 and SOX2-interdependent factor occupancy of DC5 in a chromatin environment in vivo, providing the molecular basis of synergistic activation by Pax6 and SOX2. Subtle alterations of the Pax6-binding-site sequence of DC5 or of the inter-binding-sites distance diminished the cooperative binding and caused formation of a non-functional low-mobility form complex, suggesting DNA sequence-guided and protein interaction-induced conformation change of the Pax6 protein. When ectopically expressed in embryo ectoderm, Pax6 and SOX2 in combination activate delta-crystallin gene and elicit lens placode development, indicating that the complex of Pax6 and SOX2 formed on specific DNA sequences is the genetic switch for initiation of lens differentiation.

Indexed as

AnimalsCell DifferentiationCells, CulturedChick EmbryoCrystallinsDNA-Binding ProteinsEnhancer Elements, GeneticEye ProteinsGene Expression Regulation, DevelopmentalHMGB ProteinsHomeodomain ProteinsLens, CrystallineNuclear ProteinsPaired Box Transcription FactorsPAX6 Transcription FactorProtein BindingCrystallinsDNA-Binding ProteinsEye ProteinsHMGB ProteinsHomeodomain ProteinsNuclear ProteinsPaired Box Transcription FactorsPAX6 Transcription FactorRepressor ProteinsRNA, MessengerSOXB1 Transcription FactorsTranscription Factors

Identifiers

PMID11358870
PMCPMC313803
OpenAlexW2161889215

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.