Evidence map›Paper›PMID 11353864›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Three-dimensional reconstruction of the recombinant type 3 ryanodine receptor and localization of its amino terminus.

Z Liu, J Zhang, M R Sharma, P Li, S R Chen, T Wagenknecht

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Calcium and arrhythmogenesis.Physiological reviews · 2007
    Pooled it
  2. Article
  3. Article
  4. A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM.Protein science : a publication of the Protein Society · 2017
    Review
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  11. Review
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  17. The architecture of the DNA replication origin recognition complex in Saccharomyces cerevisiae.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  18. Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Z LiuWadsworth Center for Laboratories and Research, New York State Department of Health, Albany, NY 12201, USA. liuz@wadsworth.org
J Zhang
M R Sharma
P Li
S R Chen
T Wagenknecht
New York State Department of Health · USUniversity of Calgary · CAUniversity at Albany, State University of New York · USWadsworth Center · US

Funding

ZERNIKE PHASE-CONTRAST IMAGINGP41RR001219 · NCRR · WADSWORTH CENTER · PI WAGENKNECHT, TERENCE C · 1985 to 2010
$11.1M
STRUCTURE OF CHANNELS IN EXCITATION/CONTRACTION COUPLINGR01AR040615 · NIAMS · WADSWORTH CENTER · PI WAGENKNECHT, TERENCE C · 1991 to 2014
$5.6M
NCRR NIH HHS P41 RR001219NCRR NIH HHS RR01219NIAMS NIH HHS AR40615NIAMS NIH HHS R01 AR040615
6 · The paper itself

Abstract

Recombinant type 3 ryanodine receptor (RyR3) has been purified in quantities sufficient for structural characterization by cryoelectron microscopy and three-dimensional (3D) reconstruction. Two cDNAs were prepared and expressed in HEK293 cells, one encoding the wild-type RyR3 and the other encoding RyR3 containing glutathione S-transferase (GST) fused to its amino terminus (GST-RyR3). RyR3 was purified from detergent-solubilized transfected cells by affinity chromatography using 12.6-kDa FK506-binding protein in the form of a GST fusion as the affinity ligand. Purification of GST-RyR3 was achieved by affinity chromatography by using glutathione-Sepharose. Purified recombinant RyR3 and GST-RyR3 proteins exhibited high-affinity [(3)H]ryanodine binding that was sensitive to activation by Ca(2+) and caffeine and to inhibition by Mg(2+). 3D reconstructions of both recombinant RyR3 and GST-RyR3 appeared very similar to that of the native RyR3 purified from bovine diaphragm. Comparison of the 3D reconstructions of RyR3 and GST-RyR3 revealed that the GST domains and, hence, the amino termini of the RyR3 subunits are located in the "clamp" structures that form the corners of the square-shaped cytoplasmic region of homotetrameric RyR3. This study describes the 3D reconstruction of a recombinant ryanodine receptor and it demonstrates the potential of this technology for characterizing functional and structural perturbations introduced by site-directed mutagenesis.

Indexed as

Cell LineCryoelectron MicroscopyGlutathione TransferaseHumansProtein ConformationRecombinant Fusion ProteinsRyanodine Receptor Calcium Release ChannelGlutathione TransferaseRecombinant Fusion ProteinsRyanodine Receptor Calcium Release Channel

Identifiers

PMID11353864
PMCPMC33429
OpenAlexW2018631567

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.