Evidence map›Paper›PMID 11353069›Full record

ArticleNucleic acids research2001

Analysis of a donor gene region for a variant surface glycoprotein and its expression site in African trypanosomes.

D J LaCount, N M El-Sayed, S Kaul, D Wanless, C M Turner, J E Donelson

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

D J LaCountDepartment of Biochemistry, University of Iowa, 51 Newton Road, Iowa City, IA 52242, USA.
N M El-Sayed
S Kaul
D Wanless
C M Turner
J E Donelson
University of Iowa · US

Funding

AFRICAN TRYPANOSOME GENOME SEQUENCINGU01AI043062 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI EL-SAYED, NAJIB M. · 2000 to 2003
$2.5M
AMASTIN/TUZIN GENE CLUSTER OF TRYPANOSOMA CRUZIR01AI040591 · NIAID · UNIVERSITY OF IOWA · PI DONELSON, JOHN E · 1997 to 2001
$387k
CHARACTERIZATION OF TRYPANOSOMA BRUCEI GP63 PROTEINF32AI010512 · NIAID · UNIVERSITY OF WASHINGTON · PI LACOUNT, DOUGLAS J. · 2000 to 2001
$55k
AFRICAN TRYPANOSOME GENOME SEQUENCINGR01AI043062 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI EL-SAYED, NAJIB M. · 1998 to 1999
–
NIAID NIH HHS AI10512NIAID NIH HHS AI40591NIAID NIH HHS AI43062NIAID NIH HHS F32 AI010512NIAID NIH HHS R01 AI043062NIAID NIH HHS U01 AI043062Wellcome Trust
6 · The paper itself

Abstract

African trypanosomes evade the immune response of their mammalian hosts by sequentially expressing genes for different variant surface glycoproteins (VSGs) from telomere-linked VSG expression sites. In the Trypanosoma brucei clone whose genome is being sequenced (GUTat 10.1), we show that the expressed VSG (VSG 10.1) is duplicated from a silent donor VSG located at another telomere-linked site. We have determined two 130 kb sequences representing the VSG 10.1 donor and expression sites. The telomere-linked donor VSG 10.1 resembles metacyclic VSG expression sites, and is preceded by a cluster of 35 or more tandem housekeeping genes, all of which are transcribed away from the telomere. The 45 kb telomere-linked VSG 10.1 expression site contains a promoter followed by seven expression site-associated genes (ESAGs), three pseudo ESAGs, two pseudo VSGs and VSG 10.1. The 80 kb preceding the expression site has few, if any, functional ORFs, but contains 50 bp repeats, INGI retrotransposon-like elements, and novel 4-12 kb repeats found near other telomeres. This analysis provides the first look over a 130 kb range of a telomere-linked donor VSG and its corresponding telomere-linked VSG expression site and forms the basis for studies on antigenic variation in the context of a completely sequenced genome.

Indexed as

Gene Expression RegulationAmino Acid SequenceAnimalsBase SequenceChromosomes, Artificial, BacterialCloning, MolecularDNA, ComplementaryGene OrderGenes, DuplicateGenes, ProtozoanGenetic LinkageMolecular Sequence DataMultigene FamilyOpen Reading FramesPromoter Regions, GeneticPseudogenesDNA, ComplementaryRetroelementsRNA, MessengerVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID11353069
PMCPMC55451
OpenAlexW2161950961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.