Evidence map›Paper›PMID 11337478›Full record

ArticleGenome research2001

Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence.

T B Nesterova, S Y Slobodyanyuk, E A Elisaphenko, A I Shevchenko, C Johnston, M E Pavlova, I B Rogozin, N N Kolesnikov, N Brockdorff, S M Zakian

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 204 citations in OpenAlex.

  1. Review
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  13. A lifelong duty: how Xist maintains the inactive X chromosome.Current opinion in genetics & development · 2022
    Review
  14. Article
  15. Article
  16. Gene regulation in time and space during X-chromosome inactivation.Nature reviews. Molecular cell biology · 2022
    Review
  17. Article
  18. Review
  19. Review
  20. Review

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

T B NesterovaInstitute of Cytology and Genetics, Russian Academy of Sciences, Siberian Department, Novosibirsk 630090, Russia. tatyana.nesterova@csc.mrc.ac.uk
S Y Slobodyanyuk
E A Elisaphenko
A I Shevchenko
C Johnston
M E Pavlova
I B Rogozin
N N Kolesnikov
N Brockdorff
S M Zakian
Hammersmith Hospital · GBRussian Academy of Sciences · RU

Funding

Wellcome Trust
6 · The paper itself

Abstract

The Xist locus plays a central role in the regulation of X chromosome inactivation in mammals, although its exact mode of action remains to be elucidated. Evolutionary studies are important in identifying conserved genomic regions and defining their possible function. Here we report cloning, sequence analysis, and detailed characterization of the Xist gene from four closely related species of common vole (field mouse), Microtus arvalis. Our analysis reveals that there is overall conservation of Xist gene structure both between different vole species and relative to mouse and human Xist/XIST. Within transcribed sequence, there is significant conservation over five short regions of unique sequence and also over Xist-specific tandem repeats. The majority of unique sequences, however, are evolving at an unexpectedly high rate. This is also evident from analysis of flanking sequences, which reveals a very high rate of rearrangement and invasion of dispersed repeats. We discuss these results in the context of Xist gene function and evolution.

Indexed as

Evolution, MolecularGenes3' Untranslated Regions5' Untranslated RegionsAnimalsAnimals, WildArvicolinaeBase SequenceCells, CulturedChromosome MappingConserved SequenceDNAFemaleGenetic MarkersHumansMale3' Untranslated Regions5' Untranslated RegionsDNAGenetic MarkersRNA, Long NoncodingRNA, UntranslatedTranscription FactorsXIST non-coding RNA

Identifiers

PMID11337478
PMCPMC311126
OpenAlexW2003983029

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.