Evidence map›Paper›PMID 11333237›Full record

ArticleGenetics2001

Long-range repression by multiple polycomb group (PcG) proteins targeted by fusion to a defined DNA-binding domain in Drosophila.

R R Roseman, K Morgan, D R Mallin, R Roberson, T J Parnell, D J Bornemann, J A Simon, P K Geyer

Abstract read
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Samd7 is a cell type-specific PRC1 component essential for establishing retinal rod photoreceptor identity.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Recruitment of polycomb complexes: a role for SCM.Molecular and cellular biology · 2010
    Article
  11. MBT domain proteins in development and disease.Seminars in cell & developmental biology · 2010
    Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

R R RosemanDepartment of Biochemistry, The University of Iowa, Iowa City, IA 52242, USA.
K Morgan
D R Mallin
R Roberson
T J Parnell
D J Bornemann
J A Simon
P K Geyer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A tethering assay was developed to study the effects of Polycomb group (PcG) proteins on gene expression in vivo. This system employed the Su(Hw) DNA-binding domain (ZnF) to direct PcG proteins to transposons that carried the white and yellow reporter genes. These reporters constituted naive sensors of PcG effects, as bona fide PcG response elements (PREs) were absent from the constructs. To assess the effects of different genomic environments, reporter transposons integrated at nearly 40 chromosomal sites were analyzed. Three PcG fusion proteins, ZnF-PC, ZnF-SCM, and ZnF-ESC, were studied, since biochemical analyses place these PcG proteins in distinct complexes. Tethered ZnF-PcG proteins repressed white and yellow expression at the majority of sites tested, with each fusion protein displaying a characteristic degree of silencing. Repression by ZnF-PC was stronger than ZnF-SCM, which was stronger than ZnF-ESC, as judged by the percentage of insertion lines affected and the magnitude of the conferred repression. ZnF-PcG repression was more effective at centric and telomeric reporter insertion sites, as compared to euchromatic sites. ZnF-PcG proteins tethered as far as 3.0 kb away from the target promoter produced silencing, indicating that these effects were long range. Repression by ZnF-SCM required a protein interaction domain, the SPM domain, which suggests that this domain is not primarily used to direct SCM to chromosomal loci. This targeting system is useful for studying protein domains and mechanisms involved in PcG repression in vivo.

Indexed as

ATP-Binding Cassette TransportersDrosophila ProteinsAmino Acid SequenceAnimalsBinding SitesDNADNA-Binding ProteinsDrosophilaEnhancer Elements, GeneticEye ProteinsGene ExpressionHistone-Lysine N-MethyltransferaseInsect ProteinsMolecular Sequence DataPolycomb Repressive Complex 1Polycomb Repressive Complex 2ATP-Binding Cassette TransportersDNADNA-Binding ProteinsDrosophila Proteinsesc protein, DrosophilaEye ProteinsHistone-Lysine N-MethyltransferaseInsect ProteinsPc protein, DrosophilaPolycomb Repressive Complex 1Polycomb Repressive Complex 2Recombinant Fusion Proteinsw protein, Drosophilay protein, Drosophila

Identifiers

PMID11333237
PMCPMC1461647

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.