Evidence map›Paper›PMID 11325987›Full record

ArticleJournal of clinical microbiology2001

Classification and identification of enterococci: a comparative phenotypic, genotypic, and vibrational spectroscopic study.

C Kirschner, K Maquelin, P Pina, N A Ngo Thi, L P Choo-Smith, G D Sockalingum, C Sandt, D Ami, F Orsini, S M Doglia and 4 more

Abstract readComparative Study
In one paragraph

Article in Journal of clinical microbiology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
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  7. Clinical Resistant Strains ofAntibiotics (Basel, Switzerland) · 2023
    Article
  8. Article
  9. Review
  10. Determination ofJournal of pathogens · 2022
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

C KirschnerRobert Koch Institute, Biophysical Structure Analyses, Nordufer 20, 13353 Berlin, Germany. KirschnerC@rki.de
K Maquelin
P Pina
N A Ngo Thi
L P Choo-Smith
G D Sockalingum
C Sandt
D Ami
F Orsini
S M Doglia
P Allouch
M Mainfait
G J Puppels
D Naumann

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rapid and accurate identification of enterococci at the species level is an essential task in clinical microbiology since these organisms have emerged as one of the leading causes of nosocomial infections worldwide. Vibrational spectroscopic techniques (infrared [IR] and Raman) could provide potential alternatives to conventional typing methods, because they are fast, easy to perform, and economical. We present a comparative study using phenotypic, genotypic, and vibrational spectroscopic techniques for typing a collection of 18 Enterococcus strains comprising six different species. Classification of the bacteria by Fourier transform (FT)-IR spectroscopy in combination with hierarchical cluster analysis revealed discrepancies for certain strains when compared with results obtained from automated phenotypic systems, such as API and MicroScan. Further diagnostic evaluation using genotypic methods-i.e., PCR of the species-specific ligase and glycopeptide resistance genes, which is limited to the identification of only four Enterococcus species and 16S RNA sequencing, the "gold standard" for identification of enterococci-confirmed the results obtained by the FT-IR classification. These results were later reproduced by three different laboratories, using confocal Raman microspectroscopy, FT-IR attenuated total reflectance spectroscopy, and FT-IR microspectroscopy, demonstrating the discriminative capacity and the reproducibility of the technique. It is concluded that vibrational spectroscopic techniques have great potential as routine methods in clinical microbiology.

Indexed as

Bacterial Typing TechniquesDNA, BacterialEnterococcusGenotypeHumansPhenotypePolymerase Chain ReactionRNA, Ribosomal, 16SSequence Analysis, DNASpectroscopy, Fourier Transform InfraredSpectrum Analysis, RamanDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID11325987
PMCPMC88022

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.