Evidence map›Paper›PMID 11312362›Full record

ArticleJournal of virology2001

Identification of critical elements in the tRNA acceptor stem and T(Psi)C loop necessary for human immunodeficiency virus type 1 infectivity.

Q Yu, C D Morrow

Abstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Q YuDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
C D Morrow

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
MOLECULAR ANALYSIS OF HIV1 REVERSE TRANSCRIPTIONR37AI034749 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MORROW, CASEY D · 1999 to 2008
$2.5M
STRUCTURES OF HIV 1 INITIATION COMPLEX DOMAINS BY NMRP01GM056544 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MORROW, CASEY D · 1997 to 2001
$1.7M
MOLECULAR ANALYSIS OF HIV-1 REVERSE TRANSCRIPTIONR01AI034749 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MORROW, CASEY D · 1994 to 1998
–
NIAID NIH HHS AI-27767NIAID NIH HHS AI34749NIAID NIH HHS P30 AI027767NIAID NIH HHS R37 AI034749NIGMS NIH HHS GM56544
6 · The paper itself

Abstract

A mutant human immunodeficiency virus type 1 (HIV-1) with a primer binding site (PBS) complementary to yeast tRNA(Phe) (psHIV-Phe), which relies on exogenous yeast tRNA(Phe) as reverse transcription primer, was used to investigate elements in the tRNA acceptor stem and T(Psi)C stem-loop required for the tRNA primer selection and use in HIV-1 replication. tRNA(Phe) mutants with two- or four-nucleotide deletions in the 3' end retained the capacity to complement replication of psHIV-Phe. tRNA(Phe) mutants with an extended 5' end had reduced capacity for complementation, which could be restored by extension of the 3' end of these tRNA(Phe) mutants with sequences complementary to the HIV-1 U5 region. Further analysis of mutations in the acceptor stem of tRNA(Phe) suggested that an intact acceptor stem RNA structure is important for complementation. Analysis of single-nucleotide changes in the T(Psi)C stem-loop of tRNA(Phe) revealed an unexpected, essential role of this region for rescue of psHIV-Phe.

Indexed as

RNARNA, Transfer, PheRNA, ViralTranscription, GeneticBinding SitesHIV-1HumansNucleic Acid ConformationRNA, FungalSaccharomyces cerevisiaeRNARNA, FungalRNA primersRNA, Transfer, PheRNA, Viral

Identifiers

PMID11312362
PMCPMC114245

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.