Evidence map›Paper›PMID 11312326›Full record

ArticleJournal of virology2001

Identification of a novel posttranscriptional regulatory element by using a rev- and RRE-mutated human immunodeficiency virus type 1 DNA proviral clone as a molecular trap.

F Nappi, R Schneider, A Zolotukhin, S Smulevitch, D Michalowski, J Bear, B K Felber, G N Pavlakis

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Production of lentiviral vectors.Molecular therapy. Methods & clinical development · 2016
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Transfection of nerve cells.Neuroscience and behavioral physiology · 2010
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

F NappiHuman Retrovirus Section, Basic Research Laboratory, National Cancer Institute-Frederick, Frederick, Maryland 21702-1201, USA.
R Schneider
A Zolotukhin
S Smulevitch
D Michalowski
J Bear
B K Felber
G N Pavlakis
Frederick National Laboratory for Cancer Research · USOffice of Infectious Diseases · USNational Cancer Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) and all other lentiviruses utilize the essential viral protein Rev, which binds to RRE RNA, to export their unspliced and partially spliced mRNAs from the nucleus. We used a rev- and RRE-defective HIV type 1 (HIV-1) molecular clone in complementation experiments to establish a method for the rapid isolation of posttranscriptional regulatory elements from the mammalian genome by selecting for rescue of virus replication. Viruses rescued by this method contained a novel element with homology to rodent intracisternal A-particle (IAP) retroelements. A functional element was contained within a 247-nucleotide fragment named RNA transport element (RTE), which was able to promote replication of the Rev- and RRE-defective HIV-1 in both human lymphoid cell lines and primary lymphocytes, demonstrating its potent posttranscriptional function. RTE was functional in many cell types, indicating that the cellular factors that recognize RTE are widely expressed and evolutionarily conserved. RTE also promoted RNA export from Xenopus oocyte nuclei. RTE-mediated RNA transport was CRM1 independent, and RTE did not show high affinity for binding to mRNA export factor TAP/NXF1. Since CRM1 and TAP/NXF1 are critical export receptors associated with the two recognized mRNA export pathways, these results suggest that RTE functions via a distinct export mechanism. Taken together, our results identify a novel posttranscriptional control element that uses a conserved cellular export mechanism.

Indexed as

Genes, RegulatorKaryopherinsNucleocytoplasmic Transport ProteinsReceptors, Cytoplasmic and NuclearRNA Processing, Post-TranscriptionalActive Transport, Cell NucleusAnimalsBase SequenceCarrier ProteinsCloning, MolecularDNA, ViralExportin 1 ProteinGene Products, revGenes, envGenes, Intracisternal A-ParticleHIV-1Carrier ProteinsDNA, ViralExportin 1 ProteinGene Products, revKaryopherinsNuclear ProteinsNucleocytoplasmic Transport ProteinsNXF1 protein, humanReceptors, Cytoplasmic and Nuclearrev Gene Products, Human Immunodeficiency VirusRNARNA-Binding ProteinsRNA, Messenger

Identifiers

PMID11312326
PMCPMC114209
OpenAlexW2102380969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.