Evidence map›Paper›PMID 11309502›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability.

Y H Jin, R Obert, P M Burgers, T A Kunkel, M A Resnick, D A Gordenin

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 158 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A four-point molecular handover during Okazaki maturation.Nature structural & molecular biology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Extrinsic proofreading.DNA repair · 2022
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. How asymmetric DNA replication achieves symmetrical fidelity.Nature structural & molecular biology · 2021
    Article
  19. Article
  20. Review

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Y H JinLaboratory of Molecular Genetics, National Institute of Environmental Health Sciences, 111 TW Alexander Drive, Research Triangle Park, NC 27709, USA.
R Obert
P M Burgers
T A Kunkel
M A Resnick
D A Gordenin
National Institute of Environmental Health Sciences · US

Funding

ENZYMOLOGY OF REPLICATION OF YEAST CHROMOSOMAL DNAR01GM032431 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 1985 to 2015
$6.5M
Structure-Function Studies Of DNA Replication FidelityZ01ES065070 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 1991 to 2008
$4.3M
MOLECULAR MECHANISMS OF DNA REPAIR AND RECOMBINATION IN YEASTZ01ES065073 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI RESNICK, MICHAEL A · 1991 to 2008
$2.8M
STRUCTURE/FUNCTION OF YEAST DNA POLYMERASE DELTAR01GM058534 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 1999 to 2002
$499k
DNA REPLICATION FIDELITYZ01ES065046 · NIEHS · ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 1987 to 2004
–
NIGMS NIH HHS GM48434NIGMS NIH HHS R01 GM032431NIGMS NIH HHS R01 GM058534
6 · The paper itself

Abstract

Many DNA polymerases (Pol) have an intrinsic 3'-->5' exonuclease (Exo) activity which corrects polymerase errors and prevents mutations. We describe a role of the 3'-->5' Exo of Pol delta as a supplement or backup for the Rad27/Fen1 5' flap endonuclease. A yeast rad27 null allele was lethal in combination with Pol delta mutations in Exo I, Exo II, and Exo III motifs that inactivate its exonuclease, but it was viable with mutations in other parts of Pol delta. The rad27-p allele, which has little phenotypic effect by itself, was also lethal in combination with mutations in the Pol delta Exo I and Exo II motifs. However, rad27-p Pol delta Exo III double mutants were viable. They exhibited strong synergistic increases in CAN1 duplication mutations, intrachromosomal and interchromosomal recombination, and required the wild-type double-strand break repair genes RAD50, RAD51, and RAD52 for viability. Observed effects were similar to those of the rad27-null mutant deficient in the removal of 5' flaps in the lagging strand. These results suggest that the 3'-->5' Exo activity of Pol delta is redundant with Rad27/Fen1 for creating ligatable nicks between adjacent Okazaki fragments, possibly by reducing the amount of strand-displacement in the lagging strand.

Indexed as

Amino Acid Transport SystemsFungal ProteinsSaccharomyces cerevisiae ProteinsAllelesChromosomes, FungalDNA Polymerase IIIDNA RepairDNA ReplicationEndodeoxyribonucleasesExodeoxyribonucleasesFlap EndonucleasesGene DeletionGene DuplicationGenes, LethalGenetic Complementation TestGenome, FungalAmino Acid Transport SystemsCAN1 protein, Candida albicansDNA Polymerase IIIEndodeoxyribonucleasesexodeoxyribonuclease IIIExodeoxyribonucleasesFlap EndonucleasesFungal ProteinsMembrane Transport ProteinsMultienzyme ComplexesRAD27 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID11309502
PMCPMC33174
OpenAlexW2104261681

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.