Evidence map›Paper›PMID 11309412›Full record

ArticleThe Journal of cell biology2001

An exclusively nuclear RNA-binding protein affects asymmetric localization of ASH1 mRNA and Ash1p in yeast.

R M Long, W Gu, X Meng, G Gonsalvez, R H Singer, P Chartrand

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Review
  3. Intracellular mRNA transport and localized translation.Nature reviews. Molecular cell biology · 2021
    Review
  4. Puf6 and Loc1 Are the Dedicated Chaperones of Ribosomal Protein Rpl43 inInternational journal of molecular sciences · 2019
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Hooking She3p onto She2p for myosin-mediated cytoplasmic mRNA transport.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  10. Article
  11. Review
  12. Role of Loc1p in assembly and reorganization of nuclear ASH1 messenger ribonucleoprotein particles in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Principles of mRNA transport in yeast.Cellular and molecular life sciences : CMLS · 2012
    Review
  18. Review
  19. Review
  20. Control of cytoplasmic mRNA localization.Cellular and molecular life sciences : CMLS · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

R M LongMedical College of Wisconsin, Department of Microbiology and Molecular Genetics, Milwaukee, Wisconsin 53226, USA. rlong@mcw.edu
W Gu
X Meng
G Gonsalvez
R H Singer
P Chartrand
Yeshiva University · USMedical College of Wisconsin · USAlbert Einstein College of Medicine · US

Funding

RNA TRANSPORT AND LOCALIZATION IN YEAST IN SITUR01GM057071 · NIGMS · YESHIVA UNIVERSITY · PI SINGER, ROBERT H · 1998 to 2019
$5.7M
RNA LOCALIZATION IN S.CEREVISIAER01GM060392 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI LONG, ROY M · 2000 to 2004
$1.1M
CYTOSKELETAL ORGANIZATION AND MALIGNANT TRANSFORMATIONT32CA009475 · NCI · YESHIVA UNIVERSITY · PI SATIR, PETER · 1985 to 2002
$621k
SPATIAL ORGANIZATION OF PRE-MRNA PROCESSINGF32HD008088 · NICHD · YESHIVA UNIVERSITY · PI LONG, ROY M · 1996 to 1998
–
NCI NIH HHS 2-T32-CA09475NCI NIH HHS T32 CA009475NICHD NIH HHS F32 HD008088NICHD NIH HHS F32 HD08088NIGMS NIH HHS GM57071NIGMS NIH HHS GM60392NIGMS NIH HHS R01 GM057071NIGMS NIH HHS R01 GM060392
6 · The paper itself

Abstract

The localization of ASH1 mRNA to the distal tip of budding yeast cells is essential for the proper regulation of mating type switching in Saccharomyces cerevisiae. A localization element that is predominantly in the 3'-untranslated region (UTR) can direct this mRNA to the bud. Using this element in the three-hybrid in vivo RNA-binding assay, we identified a protein, Loc1p, that binds in vitro directly to the wild-type ASH1 3'-UTR RNA, but not to a mutant RNA incapable of localizing to the bud nor to several other mRNAs. LOC1 codes for a novel protein that recognizes double-stranded RNA structures and is required for efficient localization of ASH1 mRNA. Accordingly, Ash1p gets symmetrically distributed between daughter and mother cells in a loc1 strain. Surprisingly, Loc1p was found to be strictly nuclear, unlike other known RNA-binding proteins involved in mRNA localization which shuttle between the nucleus and the cytoplasm. We propose that efficient cytoplasmic ASH1 mRNA localization requires a previous interaction with specific nuclear factors.

Indexed as

DNA-Binding ProteinsRepressor ProteinsSaccharomyces cerevisiae Proteins3' Untranslated RegionsAmino Acid SequenceCell NucleusFungal ProteinsGenes, ReporterIn Situ Hybridization, FluorescenceMolecular Sequence DataNuclear ProteinsPlasmidsPrecipitin TestsProtein TransportRecombinant Fusion ProteinsRegulatory Sequences, Nucleic Acid3' Untranslated RegionsASH1 protein, S cerevisiaeDNA-Binding ProteinsFungal ProteinsLOC1 protein, S cerevisiaeNPL3 protein, S cerevisiaeNuclear ProteinsRecombinant Fusion ProteinsRepressor ProteinsRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID11309412
PMCPMC2169461
OpenAlexW2107424716

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.