Evidence map›Paper›PMID 11299375›Full record

ArticlePlant physiology2001

Phytochrome A mediates blue light and UV-A-dependent chloroplast gene transcription in green leaves.

L Chun, A Kawakami, D A Christopher

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Plant physiology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Influence of aPlants (Basel, Switzerland) · 2023
    Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Measuring Phytochrome-Dependent Light Input to the Plant Circadian Clock.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  8. Article
  9. Article
  10. Phytochrome A and B Regulate Primary Metabolism inFrontiers in plant science · 2017
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Evolutionary rewiring: a modified prokaryotic gene-regulatory pathway in chloroplasts.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

L ChunDepartment of Molecular Biosciences and Biosystems Engineering, University of Hawaii, 1955 East-West Road, AgSciences III, Room 218, Honolulu, Hawaii 96822, USA.
A Kawakami
D A Christopher
University of Hawaii System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We characterized the photobiology of light-activated chloroplast transcription and transcript abundance in mature primary leaves by using the following two systems: transplastomic promoter-reporter gene fusions in tobacco (Nicotiana tabacum), and phytochrome (phyA, phyB, and hy2) and cryptochrome (cry1) mutants of Arabidopsis. In both dicots, blue light and UV-A radiation were the major signals that activated total chloroplast and psbA, rbcL, and 16S rrn transcription. In contrast, transcription activities in plants exposed to red and far-red light were 30% to 85% less than in blue light/UV-A, depending on the gene and plant species. Total chloroplast, psbA, and 16S rrn transcription were 60% to 80% less in the Arabidopsis phyA mutant exposed to blue light/UV-A relative to wild type, thus definitively linking phyA signaling to these photoresponses. To our knowledge, the major role of phyA in mediating the blue light/UV-A photoresponses is a new function for phyA in chloroplast biogenesis at this stage of leaf development. Although rbcL expression in plants exposed to UV-A was 50% less in the phyA mutant relative to wild type, blue light-induced rbcL expression was not significantly affected in the phyA, phyB, and cry1 mutants. However, rbcL expression in blue light was 60% less in the phytochrome chromophore mutant, hy2, relative to wild type, indicating that another phytochrome species (phyC, D, or E) was involved in blue light-induced rbcL transcription. Therefore, at least two different phytochromes, as well as phytochrome-independent photosensory pathways, mediated blue light/UV-A-induced transcription of chloroplast genes in mature leaves.

Indexed as

LightPlants, ToxicUltraviolet RaysArabidopsisArabidopsis ProteinsChloroplastsCotyledonDarknessGene Expression Regulation, PlantNicotianaPhytochromePhytochrome APlant LeavesPromoter Regions, GeneticTranscription, GeneticArabidopsis ProteinsPHYA protein, ArabidopsisPhytochromePhytochrome A

Identifiers

PMID11299375
PMCPMC88851
OpenAlexW2042391360

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.