Evidence map›Paper›PMID 11296268›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Overexpression of 5-methylcytosine DNA glycosylase in human embryonic kidney cells EcR293 demethylates the promoter of a hormone-regulated reporter gene.

B Zhu, D Benjamin, Y Zheng, H Angliker, S Thiry, M Siegmann, J P Jost

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. DNA demethylation by TDG.Epigenomics · 2012
    Review
  10. Review
  11. Active DNA demethylation in plants and animals.Cold Spring Harbor symposia on quantitative biology · 2012
    Review
  12. Article
  13. Article
  14. Endocrine disruptors, environmental oxygen, epigenetics and pregnancy.Frontiers in bioscience (Elite edition) · 2011
    Review
  15. Article
  16. Review
  17. Active cytosine demethylation triggered by a nuclear receptor involves DNA strand breaks.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  18. DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

B ZhuFriedrich Miescher-Institut, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.
D Benjamin
Y Zheng
H Angliker
S Thiry
M Siegmann
J P Jost
Friedrich Miescher Institute · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have shown that the DNA demethylation complex isolated from chicken embryos has a G(.)T mismatch DNA glycosylase that also possesses 5-methylcytosine DNA glycosylase (5-MCDG) activity. Herein we show that human embryonic kidney cells stably transfected with 5-MCDG cDNA linked to a cytomegalovirus promoter overexpress 5-MCDG. A 15- to 20-fold overexpression of 5-MCDG results in the specific demethylation of a stably integrated ecdysone-retinoic acid responsive enhancer-promoter linked to a beta-galactosidase reporter gene. Demethylation occurs in the absence of the ligand ponasterone A (an analogue of ecdysone). The state of methylation of the transgene was investigated by Southern blot analysis and by the bisulfite genomic sequencing reaction. Demethylation occurs downstream of the hormone response elements. No genome-wide demethylation was observed. The expression of an inactive mutant of 5-MCDG or the empty vector does not elicit any demethylation of the promoter-enhancer of the reporter gene. An increase in 5-MCDG activity does not influence the activity of DNA methyltransferase(s) when tested in vitro with a hemimethylated substrate. There is no change in the transgene copy number during selection of the clones with antibiotics. Immunoprecipitation combined with Western blot analysis showed that an antibody directed against 5-MCDG precipitates a complex containing the retinoid X receptor alpha. The association between retinoid receptor and 5-MCDG is not ligand dependent. These results suggest that a complex of the hormone receptor with 5-MCDG may target demethylation of the transgene in this system.

Indexed as

DNA GlycosylasesDNA MethylationAzacitidineBlotting, SouthernCell LineEcdysteroneEnhancer Elements, GeneticGene AmplificationGene DosageGene Expression RegulationGene SilencingGenes, ReporterHormonesHumansKidneyMacromolecular Substances5-methylcytosine-DNA glycosylaseAzacitidineDNA GlycosylasesEcdysteroneHormonesMacromolecular SubstancesN-Glycosyl Hydrolasesponasterone AReceptors, Retinoic AcidRetinoid X ReceptorsTranscription FactorsTretinoin

Identifiers

PMID11296268
PMCPMC33158
OpenAlexW2022405729

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.