Evidence map›Paper›PMID 11292844›Full record

ArticleNucleic acids research2001

The wing in yeast heat shock transcription factor (HSF) DNA-binding domain is required for full activity.

M P Cicero, S T Hubl, C J Harrison, O Littlefield, J A Hardy, H C Nelson

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. PbHsfC1a-coordinates ABA biosynthesis and HPlant biotechnology journal · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

M P CiceroJohnson Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6089, USA.
S T Hubl
C J Harrison
O Littlefield
J A Hardy
H C Nelson
Johnson Foundation · US

Funding

STRUCTURE OF HEAT SHOCK TRANSCRIPTION FACTOR FROM YEASTR01GM044086 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI NELSON, HILLARY C · 1990 to 2005
$2.0M
NIGMS NIH HHS GM44086NIGMS NIH HHS R01 GM044086
6 · The paper itself

Abstract

The yeast heat shock transcription factor (HSF) belongs to the winged helix family of proteins. HSF binds DNA as a trimer, and additional trimers can bind DNA co-operatively. Unlike other winged helix-turn-helix proteins, HSF's wing does not appear to contact DNA, as based on a previously solved crystal structure. Instead, the structure implies that the wing is involved in protein-protein interactions, possibly within a trimer or between adjacent trimers. To understand the function of the wing in the HSF DNA-binding domain, a Saccharomyces cerevisiae strain was created that expresses a wingless HSF protein. This strain grows normally at 30 degrees C, but shows a decrease in reporter gene expression during constitutive and heat-shocked conditions. Removal of the wing does not affect the stability or trimeric nature of a protein fragment containing the DNA-binding and trimerization domains. Removal of the wing does result in a decrease in DNA-binding affinity. This defect was mainly observed in the ability to form the first trimer-bound complex, as the formation of larger complexes is unaffected by the deletion. Our results suggest that the wing is not involved in the highly co-operative nature of HSF binding, but may be important in stabilizing the first trimer bound to DNA.

Indexed as

Gene Expression Regulation, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationAmino Acid MotifsAmino Acid SequenceBinding SitesBlotting, WesternCircular DichroismDNA-Binding ProteinsDNA, FungalGenes, ReporterHeat-Shock ProteinsHeat-Shock ResponseKluyveromycesModels, MolecularDNA-Binding ProteinsDNA, FungalHeat-Shock ProteinsHSF1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID11292844
PMCPMC31317
OpenAlexW2163977322

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.