Evidence map›Paper›PMID 11292750›Full record

ArticleInfection and immunity2001

Complete DNA sequence and analysis of the large virulence plasmid of Shigella flexneri.

M M Venkatesan, M B Goldberg, D J Rose, E J Grotbeck, V Burland, F R Blattner

Abstract read
In one paragraph

Article in Infection and immunity, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

  1. Review
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  13. Toward aInternational journal of molecular sciences · 2023
    Review
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  20. The T3SS ofMicroorganisms · 2020
    Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

M M VenkatesanDepartment of Enteric Infections, Division of Communicable Diseases and Immunology, Walter Reed Army Institute of Research, Silver Spring, Maryland 20910, USA. Malabi.Venkatesan@NA.AMEDD.ARMY.MIL
M B Goldberg
D J Rose
E J Grotbeck
V Burland
F R Blattner

Funding

SHIGELLA PATHOGENESIS RELEVANT TO PROTECTIVE IMMUNITYR01AI043562 · NIAID · YESHIVA UNIVERSITY · PI GOLDBERG, MARCIA B · 1999 to 2003
$1.0M
NIAID NIH HHS AI43562
6 · The paper itself

Abstract

The complete sequence analysis of the 210-kb Shigella flexneri 5a virulence plasmid was determined. Shigella spp. cause dysentery and diarrhea by invasion and spread through the colonic mucosa. Most of the known Shigella virulence determinants are encoded on a large plasmid that is unique to virulent strains of Shigella and enteroinvasive Escherichia coli; these known genes account for approximately 30 to 35% of the virulence plasmid. In the complete sequence of the virulence plasmid, 286 open reading frames (ORFs) were identified. An astonishing 153 (53%) of these were related to known and putative insertion sequence (IS) elements; no known bacterial plasmid has previously been described with such a high proportion of IS elements. Four new IS elements were identified. Fifty putative proteins show no significant homology to proteins of known function; of these, 18 have a G+C content of less than 40%, typical of known virulence genes on the plasmid. These 18 constitute potentially unknown virulence genes. Two alleles of shet2 and five alleles of ipaH were also identified on the plasmid. Thus, the plasmid sequence suggests a remarkable history of IS-mediated acquisition of DNA across bacterial species. The complete sequence will permit targeted characterization of potential new Shigella virulence determinants.

Indexed as

PlasmidsAmino Acid SequenceBase SequenceBiological EvolutionDNA, BacterialDNA Transposable ElementsHumansMolecular Sequence DataOpen Reading FramesRepliconShigella flexneriVirulenceDNA, BacterialDNA Transposable Elements

Identifiers

PMID11292750
PMCPMC98286

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.