Evidence map›Paper›PMID 11287603›Full record

ArticleMolecular and cellular biology2001

Sequences flanking hypersensitive sites of the beta-globin locus control region are required for synergistic enhancement.

J M Molete, H Petrykowska, E E Bouhassira, Y Q Feng, W Miller, R C Hardison

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 48 citations in OpenAlex.

  1. Mechanisms of Globin Gene Regulation in Mammals.Annual review of genetics · 2025
    Review
  2. Article
  3. Article
  4. Engineering Globin Gene Expression.Molecular therapy. Methods & clinical development · 2019
    Review
  5. Article
  6. Identifying and mapping cell-type-specific chromatin programming of gene expression.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  7. Evolution of hemoglobin and its genes.Cold Spring Harbor perspectives in medicine · 2012
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Chromatin insulation by a transcriptional activator.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

J M MoleteDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
H Petrykowska
E E Bouhassira
Y Q Feng
W Miller
R C Hardison
Pennsylvania State University · USAlbert Einstein College of Medicine · US

Funding

SOFTWARE FOR ANALYZING BIOSEQUENCE DATAR01HG002238 · NHGRI · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI MILLER, WEBB COLBY · 2000 to 2010
$7.8M
THE RED CELL CYTOSKELETON AND SICKLE CELL DISEASEP60HL038655 · NHLBI · YESHIVA UNIVERSITY · PI FABRY, MARY E · 1988 to 2002
$4.9M
ORGANIZATION AND EXPRESSION OF GLOBIN GENE LOCIR01DK027635 · NIDDK · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI HARDISON, ROSS C · 1986 to 2001
$472k
SOFTWARE FOR ANALYZING BIOSEQUENCE DATAR01LM005110 · NLM · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI MILLER, WEBB COLBY · 1989 to 1999
–
NHGRI NIH HHS HG02238NHGRI NIH HHS R01 HG002238NHLBI NIH HHS HL38655NHLBI NIH HHS HL554350NIDDK NIH HHS DK27635NLM NIH HHS LM05110
6 · The paper itself

Abstract

The major distal regulatory sequence for the beta-globin gene locus, the locus control region (LCR), is composed of multiple hypersensitive sites (HSs). Different models for LCR function postulate that the HSs act either independently or synergistically. To test these possibilities, we have constructed a series of expression cassettes in which the gene encoding the enhanced green fluorescent protein (EGFP) is under the control of DNA fragments containing single and multiple HSs of the LCR. LCR DNA fragments containing only the minimal region needed for position-independent expression (HS cores) or containing cores plus flanking sequences (HS units) were compared to ascertain whether conserved sequences between the HS cores contributed to enhancement. Expression of these constructs was measured after targeted integration into three defined loci in murine erythroleukemia cells using recombinase-mediated cassette exchange. At all three marked loci, synergistic enhancement of expression was observed in cassettes containing a combination of HS2, HS3, and HS4 units. In contrast, HS2, HS3, and HS4 cores (without flanking sequences) give an activity equivalent to the sum of the activities of the individual HS cores. These data suggest a model in which an HS core plus flanking regions, bound by specific proteins, forms a structure needed for interaction with other HS units to confer strong enhancement by the LCR. The three targeted integration sites differ substantially in their permissivity for expression, but even the largest LCR construct tested could not overcome these position effects to confer equal expression at all three sites.

Indexed as

Enhancer Elements, GeneticLocus Control RegionBinding SitesGlobinsHumansGlobins

Identifiers

PMID11287603
PMCPMC86926
OpenAlexW2109252966

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.