Evidence map›Paper›PMID 11285238›Full record

ArticleThe EMBO journal2001

LAP2 binds to BAF.DNA complexes: requirement for the LEM domain and modulation by variable regions.

D K Shumaker, K K Lee, Y C Tanhehco, R Craigie, K L Wilson

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 207 citations in OpenAlex.

  1. Sequence and structural alignments reveal insights into ANKLE2 evolution and function.Protein science : a publication of the Protein Society · 2026
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  14. The Nuclear Lamina.Cold Spring Harbor perspectives in biology · 2022
    Review
  15. Article
  16. Effects of forces on chromatin.APL bioengineering · 2021
    Review
  17. The Role of Emerin in Cancer Progression and Metastasis.International journal of molecular sciences · 2021
    Review
  18. Article
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

D K ShumakerDepartment of Cell Biology and Anatomy, The Johns Hopkins University School of Medicine, 725 N.Wolfe Street, Baltimore MD 21205, USA.
K K Lee
Y C Tanhehco
R Craigie
K L Wilson
Johns Hopkins Medicine · US

Funding

REGULATION OF NUCLEAR ENVELOPE ASSEMBLY AND DISASSEMBLYR01GM048646 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WILSON, KATHERINE L · 1994 to 2012
$4.9M
STUDIES ON THE MECHANISM OF RETROVIRAL DNA INTEGRATIONZ01DK036108 · NIDDK · DIABETES, DIGESTIVE, KIDNEY DISEASES · PI CRAIGIE, ROBERT · 1988 to 2006
–
NIGMS NIH HHS R01 GM048646NIGMS NIH HHS R01 GM48646
6 · The paper itself

Abstract

LAP2 belongs to a family of nuclear membrane proteins sharing a 43 residue LEM domain. All LAP2 isoforms have the same N-terminal 'constant' region (LAP2-c), which includes the LEM domain, plus a C-terminal 'variable' region. LAP2-c polypeptide inhibits nuclear assembly in Xenopus extracts, and binds in vitro to barrier-to-autointegration factor (BAF), a DNA-bridging protein. We tested 17 Xenopus LAP2-c mutants for nuclear assembly inhibition, and binding to BAF and BAF small middle dotDNA complexes. LEM domain mutations disrupted all activities tested. Some mutations outside the LEM domain had no effect on binding to BAF, but disrupted activity in Xenopus extracts, suggesting that LAP2-c has an additional unknown function required to inhibit nuclear assembly. Mutagenesis results suggest that BAF changes conformation when complexed with DNA. The binding affinity of LAP2 was higher for BAF small middle dotDNA complexes than for BAF, suggesting that these interactions are physiologically relevant. Nucleoplasmic domains of Xenopus LAP2 isoforms varied 9-fold in their affinities for BAF, but all isoforms supershifted BAF small middle dotDNA complexes. We propose that the LEM domain is a core BAF-binding domain that can be modulated by the variable regions of LAP2 isoforms.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCell NucleusDNADNA-Binding ProteinsMembrane ProteinsMolecular Sequence DataMutagenesisNuclear ProteinsProtein ConformationProtein IsoformsSolutionsXenopus laevisDNADNA-Binding Proteinslamina-associated polypeptide 2Membrane ProteinsNuclear ProteinsProtein IsoformsSolutions

Identifiers

PMID11285238
PMCPMC145505
OpenAlexW2042791963

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.