Evidence map›Paper›PMID 11283253›Full record

ArticleMolecular and cellular biology2001

Yeast NC2 associates with the RNA polymerase II preinitiation complex and selectively affects transcription in vivo.

J V Geisberg, F C Holstege, R A Young, K Struhl

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 74 citations in OpenAlex.

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  15. Review
  16. Regulation of nuclear import and export of negative cofactor 2.The Journal of biological chemistry · 2009
    Article
  17. Article
  18. Article
  19. The dynamic personality of TATA-binding protein.Trends in biochemical sciences · 2009
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

J V GeisbergDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
F C Holstege
R A Young
K Struhl
Harvard University · USMassachusetts Institute of Technology · US

Funding

MOLECULAR MECHANISMS OF YEAST TRANSCRIPTIONAL INITIATIONR01GM030186 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1985 to 2018
$13.6M
MOLECULAR MECHANISMS OF GLOBAL REPRESSION IN YEASTR01GM053720 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1995 to 2008
$2.9M
MECHANISMS OF YEAST TRANSCRIPTIONAL INITITATIONR37GM030186 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1993 to 2002
$2.1M
GENETIC AND BIOCHEMICAL ANALYSIS OF YEAST RNA POLYMERASER01GM034365 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI YOUNG, RICHARD A · 1985 to 2004
$1.8M
NIGMS NIH HHS GM 30186NIGMS NIH HHS GM 34365NIGMS NIH HHS GM 53720NIGMS NIH HHS R01 GM030186NIGMS NIH HHS R01 GM034365NIGMS NIH HHS R01 GM053720NIGMS NIH HHS R37 GM030186
6 · The paper itself

Abstract

NC2 (Dr1-Drap1 or Bur6-Ydr1) has been characterized in vitro as a general negative regulator of RNA polymerase II (Pol II) transcription that interacts with TATA-binding protein (TBP) and inhibits its function. Here, we show that NC2 associates with promoters in vivo in a manner that correlates with transcriptional activity and with occupancy by basal transcription factors. NC2 rapidly associates with promoters in response to transcriptional activation, and it remains associated under conditions in which transcription is blocked after assembly of the Pol II preinitiation complex. NC2 positively and negatively affects approximately 17% of Saccharomyces cerevisiae genes in a pattern that resembles the response to general environmental stress. Relative to TBP, NC2 occupancy is high at promoters where NC2 is positively required for normal levels of transcription. Thus, NC2 is associated with the Pol II preinitiation complex, and it can play a direct and positive role at certain promoters in vivo.

Indexed as

Saccharomyces cerevisiae ProteinsDNA-Binding ProteinsFungal ProteinsGenes, FungalPhosphoproteinsPromoter Regions, GeneticRepressor ProteinsRNA Polymerase IISaccharomyces cerevisiaeTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIBTranscription, GeneticBUR6 protein, S cerevisiaeDNA-Binding Proteinsdown-regulator of transcription 1Fungal ProteinsPhosphoproteinsRepressor ProteinsRNA Polymerase IISaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIB

Identifiers

PMID11283253
PMCPMC86904
OpenAlexW2096786447

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.