Evidence map›Paper›PMID 11266616›Full record

ArticleProtein science : a publication of the Protein Society2001

Solvation energetics and conformational change in EF-hand proteins.

A Ababou, J R Desjarlais

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
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  6. A high-resolution structure of the EF-hand domain of human polycystin-2.Protein science : a publication of the Protein Society · 2014
    Article
  7. Article
  8. Article
  9. Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensors.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  10. Article
  11. Article
  12. Article
  13. Use of sequence duplication to engineer a ligand-triggered, long-distance molecular switch in T4 lysozyme.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Conformational and thermodynamic properties of peptide binding to the human S100P protein.Protein science : a publication of the Protein Society · 2002
    Article
  19. The EF-hand domain: a globally cooperative structural unit.Protein science : a publication of the Protein Society · 2002
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

A AbabouDepartment of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
J R Desjarlais
Pennsylvania State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calmodulin and other members of the EF-hand protein family are known to undergo major changes in conformation upon binding Ca(2+). However, some EF-hand proteins, such as calbindin D9k, bind Ca(2+) without a significant change in conformation. Here, we show the importance of a precise balance of solvation energetics to conformational change, using mutational analysis of partially buried polar groups in the N-terminal domain of calmodulin (N-cam). Several variants were characterized using fluorescence, circular dichroism, and NMR spectroscopy. Strikingly, the replacement of polar side chains glutamine and lysine at positions 41 and 75 with nonpolar side chains leads to dramatic enhancement of the stability of the Ca(2+)-free state, a corresponding decrease in Ca(2+)-binding affinity, and an apparent loss of ability to change conformation to the open form. The results suggest a paradigm for conformational change in which energetic strain is accumulated in one state in order to modulate the energetics of change to the alternative state.

Indexed as

Amino Acid SequenceCalbindinsCalciumCalmodulinCircular DichroismDNA Mutational AnalysisHumansKineticsMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataMutationProtein BindingProtein ConformationProtein Structure, TertiaryRecombinant ProteinsCalbindinsCalciumCalmodulinRecombinant ProteinsS100 Calcium Binding Protein GS100G protein, human

Identifiers

PMID11266616
PMCPMC2373930
OpenAlexW2135600128

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.