Evidence map›Paper›PMID 11266568›Full record

ArticleNucleic acids research2001

Ku80 is required for addition of N nucleotides to V(D)J recombination junctions by terminal deoxynucleotidyl transferase.

M M Purugganan, S Shah, J F Kearney, D B Roth

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Role of human Pso4 in mammalian DNA repair and association with terminal deoxynucleotidyl transferase.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

M M PuruggananDepartment of Immunology, M929, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA.
S Shah
J F Kearney
D B Roth
Baylor College of Medicine · US

Funding

Terminal Transferase and Lymphocyte DevelopmentR01AI045794 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KEARNEY, JOHN FRANKLIN · 1999 to 2008
$2.9M
Mechanisms of V(D) J RecombinationR01AI036420 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ROTH, DAVID B. · 1994 to 2009
$2.6M
NIAID NIH HHS AI36420NIAID NIH HHS AI45794-01NIAID NIH HHS R01 AI036420NIAID NIH HHS R01 AI045794
6 · The paper itself

Abstract

V(D)J recombination generates a remarkably diverse repertoire of antigen receptors through the rearrangement of germline DNA. Terminal deoxynucleotidyl transferase (TdT), a polymerase that adds random nucleotides (N regions) to recombination junctions, is a key enzyme contributing to this diversity. The current model is that TdT adds N regions during V(D)J recombination by random collision with the DNA ends, without a dependence on other cellular factors. We previously demonstrated, however, that V(D)J junctions from Ku80-deficient mice unexpectedly lack N regions, although the mechanism responsible for this effect remains undefined in the mouse system. One possibility is that junctions are formed in these mice during a stage in development when TdT is not expressed. Alternatively, Ku80 may be required for the expression, nuclear localization or enzymatic activity of TdT. Here we show that V(D)J junctions isolated from Ku80-deficient fibroblasts are devoid of N regions, as were junctions in Ku80-deficient mice. In these cells TdT protein is abundant at the time of recombination, localizes properly to the nucleus and is enzymatically active. Based on these data, we propose that TdT does not add to recombination junctions through random collision but is actively recruited to the V(D)J recombinase complex by Ku80.

Indexed as

Antigens, NuclearDNA HelicasesAnimalsCell NucleusCHO CellsCricetinaeDNA-Binding ProteinsDNA NucleotidylexotransferaseFibroblastsGene RearrangementGenes, ImmunoglobulinHomeodomain ProteinsImmunoglobulin Joining RegionImmunoglobulin Variable RegionKu AutoantigenNuclear ProteinsAntigens, NuclearDNA-Binding ProteinsDNA HelicasesDNA NucleotidylexotransferaseHomeodomain ProteinsImmunoglobulin Joining RegionImmunoglobulin Variable RegionKu AutoantigenNuclear ProteinsNucleotidesRAG-1 proteinV(D)J recombination activating protein 2XRCC5 protein, humanXrcc6 protein, humanXrcc6 protein, mouse

Identifiers

PMID11266568
PMCPMC31272
OpenAlexW2046961998

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.