ArticleNucleic acids research2001
Highly expressed and alien genes of the Synechocystis genome.
Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
30 citing papers in PubMed, 65 citations in OpenAlex.
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- Elucidation of the coping strategy in an OMP homozygous knockout mutant of Synechocystis 6803 defective in iron uptake.Archives of microbiology · 2022Article
- Genome Evolution of Filamentous CyanobacteriumMicroorganisms · 2021Article
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- Finding approximate gene clusters with Gecko 3.Nucleic acids research · 2016Article
- Insights into the Cyanobacterial Deg/HtrA Proteases.Frontiers in plant science · 2016Article
- Toward the complete proteome of Synechocystis sp. PCC 6803.Photosynthesis research · 2015Review
- Systematically ranking the tightness of membrane association for peripheral membrane proteins (PMPs).Molecular & cellular proteomics : MCP · 2015Article
- Genome-wide screening of pathogenicity islands in Mycobacterium tuberculosis based on the genomic barcode visualization.Molecular biology reports · 2014Article
- The sll1951 gene encodes the surface layer protein of Synechocystis sp. strain PCC 6803.Journal of bacteriology · 2013Article
- A new vector for identification of prokaryotes and their variable-size genomes.Current microbiology · 2013Article
- RNA-seq based identification and mutant validation of gene targets related to ethanol resistance in cyanobacterial Synechocystis sp. PCC 6803.Biotechnology for biofuels · 2012Article
- Ecological adaptation in bacteria: speciation driven by codon selection.Molecular biology and evolution · 2012Article
- Detection of horizontal transfer of individual genes by anomalous oligomer frequencies.BMC genomics · 2012Article
- A novel glyceraldehyde-3-phosphate dehydrogenase (GAPDH) promoter for expressing transgenes in the halotolerant alga Dunaliella salina.Current microbiology · 2012Article
- Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01.BMC genomics · 2011Article
- Predicting gene expression level from relative codon usage bias: an application to Escherichia coli genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2009Article
- Barcodes for genomes and applications.BMC bioinformatics · 2008Article
- Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator.BMC genomics · 2007Article
- Distinctive features of large complex virus genomes and proteomes.Proceedings of the National Academy of Sciences of the United States of America · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 1 country.
Funding
Abstract
Comparisons of codon frequencies of genes to several gene classes are used to characterize highly expressed and alien genes on the SYNECHOCYSTIS: PCC6803 genome. The primary gene classes include the ensemble of all genes (average gene), ribosomal protein (RP) genes, translation processing factors (TF) and genes encoding chaperone/degradation proteins (CH). A gene is predicted highly expressed (PHX) if its codon usage is close to that of the RP/TF/CH standards but strongly deviant from the average gene. Putative alien (PA) genes are those for which codon usage is significantly different from all four classes of gene standards. In SYNECHOCYSTIS:, 380 genes were identified as PHX. The genes with the highest predicted expression levels include many that encode proteins vital for photosynthesis. Nearly all of the genes of the RP/TF/CH gene classes are PHX. The principal glycolysis enzymes, which may also function in CO(2) fixation, are PHX, while none of the genes encoding TCA cycle enzymes are PHX. The PA genes are mostly of unknown function or encode transposases. Several PA genes encode polypeptides that function in lipopolysaccharide biosynthesis. Both PHX and PA genes often form significant clusters (operons). The proteins encoded by PHX and PA genes are described with respect to functional classifications, their organization in the genome and their stoichiometry in multi-subunit complexes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.